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Report for CCDS8302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8302.1 Public Homo sapiens 11 KDM4D 24 110 108 CCDS HistoryNCBI Gene:55693Re-query CCDS DB by CCDS ID:8302.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8302.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335080.6 ENSP00000334181.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335080.6Link to Ensembl Protein Viewer:ENSP00000334181.5Re-query CCDS DB by Nucleotide ID:ENST00000335080Re-query CCDS DB by Protein ID:ENSP00000334181
Original member Current member EBI ENST00000536741.1 ENSP00000460897.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536741.1Link to Ensembl Protein Viewer:ENSP00000460897.1Re-query CCDS DB by Nucleotide ID:ENST00000536741Re-query CCDS DB by Protein ID:ENSP00000460897
Original member Current member EBI ENST00000610872.1 ENSP00000482224.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610872.1Link to Ensembl Protein Viewer:ENSP00000482224.1Re-query CCDS DB by Nucleotide ID:ENST00000610872Re-query CCDS DB by Protein ID:ENSP00000482224
Original member Current member NCBI NM_018039.3 NP_060509.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018039.3Link to Protein Sequence:NP_060509.2Re-query CCDS DB by Nucleotide ID:NM_018039Re-query CCDS DB by Protein ID:NP_060509Link to BLAST:NP_060509.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060509.2 523 Q6B0I6 523 100% 0 0

Chromosomal Locations for CCDS 8302.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94997373 94998944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGGAAACTATGAAGTCTAAGGCCAACTGTGCCCAGAATCCAAATTGTAACATAATGATATTTCATCCAA
CCAAAGAAGAGTTTAATGATTTTGATAAATATATTGCTTACATGGAATCCCAAGGTGCACACAGAGCTGG
CTTGGCTAAGATAATTCCACCCAAAGAATGGAAAGCCAGAGAGACCTATGATAATATCAGTGAAATCTTA
ATAGCCACTCCCCTCCAGCAGGTGGCCTCTGGGCGGGCAGGGGTGTTTACTCAATACCATAAAAAAAAGA
AAGCCATGACTGTGGGGGAGTATCGCCATTTGGCAAACAGTAAAAAATATCAGACTCCACCACACCAGAA
TTTCGAAGATTTGGAGCGAAAATACTGGAAGAACCGCATCTATAATTCACCGATTTATGGTGCTGACATC
AGTGGCTCCTTGTTTGATGAAAACACTAAACAATGGAATCTTGGGCACCTGGGAACAATTCAGGACCTGC
TGGAAAAGGAATGTGGGGTTGTCATAGAAGGCGTCAATACACCCTACTTGTACTTTGGCATGTGGAAAAC
CACGTTTGCTTGGCATACAGAGGACATGGACCTTTACAGCATCAACTACCTGCACCTTGGGGAGCCCAAA
ACTTGGTATGTGGTGCCCCCAGAACATGGCCAGCGCCTGGAACGCCTGGCCAGGGAGCTCTTCCCAGGCA
GTTCCCGGGGTTGTGGGGCCTTCCTGCGGCACAAGGTGGCCCTCATCTCGCCTACAGTTCTCAAGGAAAA
TGGGATTCCCTTCAATCGCATAACTCAGGAGGCTGGAGAGTTCATGGTGACCTTTCCCTATGGCTACCAT
GCTGGCTTCAACCATGGTTTCAACTGCGCAGAGGCCATCAATTTTGCCACTCCGCGATGGATTGATTATG
GCAAAATGGCCTCCCAGTGTAGCTGTGGGGAGGCAAGGGTGACCTTTTCCATGGATGCCTTCGTGCGCAT
CCTGCAACCTGAACGCTATGACCTGTGGAAACGTGGGCAAGACCGGGCAGTTGTGGACCACATGGAGCCC
AGGGTACCAGCCAGCCAAGAGCTGAGCACCCAGAAGGAAGTCCAGTTACCCAGGAGAGCAGCGCTGGGCC
TGAGACAACTCCCTTCCCACTGGGCCCGGCATTCCCCTTGGCCTATGGCTGCCCGCAGTGGGACACGGTG
CCACACCCTTGTGTGCTCTTCACTCCCACGCCGATCTGCAGTTAGTGGCACTGCTACGCAGCCCCGGGCT
GCTGCTGTCCACAGCTCTAAGAAGCCCAGCTCAACTCCATCATCCACCCCTGGTCCATCTGCACAGATTA
TCCACCCGTCAAATGGCAGACGTGGTCGTGGTCGCCCTCCTCAGAAACTGAGAGCTCAGGAGCTGACCCT
CCAGACTCCAGCCAAGAGGCCCCTCTTGGCGGGCACAACATGCACAGCTTCGGGCCCAGAACCTGAGCCC
CTACCTGAGGATGGGGCTTTGATGGACAAGCCTGTACCACTGAGCCCAGGGCTCCAGCATCCTGTCAAGG
CTTCTGGGTGCAGCTGGGCCCCTGTGCCCTAA

Translation (523 aa):
METMKSKANCAQNPNCNIMIFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWKARETYDNISEIL
IATPLQQVASGRAGVFTQYHKKKKAMTVGEYRHLANSKKYQTPPHQNFEDLERKYWKNRIYNSPIYGADI
SGSLFDENTKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPK
TWYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYH
AGFNHGFNCAEAINFATPRWIDYGKMASQCSCGEARVTFSMDAFVRILQPERYDLWKRGQDRAVVDHMEP
RVPASQELSTQKEVQLPRRAALGLRQLPSHWARHSPWPMAARSGTRCHTLVCSSLPRRSAVSGTATQPRA
AAVHSSKKPSSTPSSTPGPSAQIIHPSNGRRGRGRPPQKLRAQELTLQTPAKRPLLAGTTCTASGPEPEP
LPEDGALMDKPVPLSPGLQHPVKASGCSWAPVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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