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Report for CCDS19449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19449.1 Public Mus musculus 5 Mrpl1 23 108 98 CCDS HistoryNCBI Gene:94061Re-query CCDS DB by CCDS ID:19449.1Re-query CCDS DB by GeneID:94061See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036437.12 ENSMUSP00000037046.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036437.12Link to Ensembl Protein Viewer:ENSMUSP00000037046.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036437Re-query CCDS DB by Protein ID:ENSMUSP00000037046
Original member Current member EBI ENSMUST00000117766.7 ENSMUSP00000112977.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117766.7Link to Ensembl Protein Viewer:ENSMUSP00000112977.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117766Re-query CCDS DB by Protein ID:ENSMUSP00000112977
Original member Current member NCBI NM_053158.3 NP_444388.2 Accepted alive Link to Nucleotide Sequence:NM_053158.3Link to Protein Sequence:NP_444388.2Re-query CCDS DB by Nucleotide ID:NM_053158Re-query CCDS DB by Protein ID:NP_444388Link to BLAST:NP_444388.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444388.2 336 Q99N96 336 100% 0 0

Chromosomal Locations for CCDS 19449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 96210163 96210193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96213787 96213910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96223771 96224032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96226285 96226368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96227680 96227751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96231681 96231792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96238839 96238945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96262062 96262143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 96264201 96264337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGCGGCGGCCGTAAGGTGCCTCCGTAGAGTCTTGATACATCATCAAAGGCATTGTCTTTGCAAGATGG
CTTCCCAGGCATCTCTTTACCCTTGTTCTGTGAACAGTCTCTTGCACAACAGACATTTTGCTGCTGCTGC
TGCTGCTGCTACAAAGCCTGCAAGAAAAATTAAAAAAGGTGCCAAGGAAAAGACATCAGATGAAAAACCA
GTAGATGATATAGAGAAAATAAAGTCATATACGTACATGGAAAGTGATCCTGAAGATGATGTCTACTTAA
AACGCTTATACCCACGGCGGATCTATGAAGTAGAGAAAGCTATTCACTTACTTAAGAAGTTTCAAGTTCT
GGACTTTACCAATCCAAAGCAAGGTGTTTATCTTGACTTAACATTAGATATGGCATTGGGGAAAAAGAAA
ACAGTGGAGCCATTTGCCAGTGTTATTGCTTTACCACACCTCTTCTCCTCAGAAGTCAACAAGGTTGCTG
TGTTTACAGCGAACGCATCAGAAATTAAAATAGCAGAAGAAAATGGAGCTGCGTTTGCAGGAGGAACAGA
TCTGGTTAAGAAGATCATGGATGACGAGGTTGTTGTGGACTTTTATGTAGCTGTCCCAGAAATAATGGGT
GAACTTAACCCTTTAAGGAAGAAACTGAAAAAAAGATTTCCAAAGGCTACTAGAAATTCCATTGGTCGTG
ACATCCCCAAAATGCTTGAATTATTTAAAACGGCACATGAAATTATGGTAGATGAAGAAAGACAGAACTT
CCTCAGCACCAAAATAGCAACATTGGATATGCCAAGTGACCAGATAGCTGCCAATCTTCAAGCAGTTATA
AATGAGGTCTGTAAGCACAGACCACTGAATCTGGGTCCGTTTGTGGTCCGTGCCTTCCTTCGTAGTTCAA
CCAGTGAAGGTTTACTACTGAAGACTGACTCATTGCTACCCAAAGAAGCTAAAACTACAGAAGCTGAAAC
GGAAGAAACTCAAACGGCAGAAGCTGCCTAG

Translation (336 aa):
MAAAVRCLRRVLIHHQRHCLCKMASQASLYPCSVNSLLHNRHFAAAAAAATKPARKIKKGAKEKTSDEKP
VDDIEKIKSYTYMESDPEDDVYLKRLYPRRIYEVEKAIHLLKKFQVLDFTNPKQGVYLDLTLDMALGKKK
TVEPFASVIALPHLFSSEVNKVAVFTANASEIKIAEENGAAFAGGTDLVKKIMDDEVVVDFYVAVPEIMG
ELNPLRKKLKKRFPKATRNSIGRDIPKMLELFKTAHEIMVDEERQNFLSTKIATLDMPSDQIAANLQAVI
NEVCKHRPLNLGPFVVRAFLRSSTSEGLLLKTDSLLPKEAKTTEAETEETQTAEAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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