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Report for CCDS19703.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19703.1 Public Mus musculus 5 Vkorc1l1 23 108 98 CCDS HistoryNCBI Gene:69568Re-query CCDS DB by CCDS ID:19703.1Re-query CCDS DB by GeneID:69568See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19703.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051758.10 ENSMUSP00000059139.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051758.10Link to Ensembl Protein Viewer:ENSMUSP00000059139.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000051758Re-query CCDS DB by Protein ID:ENSMUSP00000059139
Original member Current member NCBI NM_027121.4 NP_081397.1 Accepted alive Link to Nucleotide Sequence:NM_027121.4Link to Protein Sequence:NP_081397.1Re-query CCDS DB by Nucleotide ID:NM_027121Re-query CCDS DB by Protein ID:NP_081397Link to BLAST:NP_081397.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081397.1 176 Q6TEK5 176 100% 0 0

Chromosomal Locations for CCDS 19703.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 129942172 129942365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129978519 129978628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 129982141 129982367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGCGGCGCCCGTCCTGCTGAGAGTGTCGGTGCCGCGTTGGGAACGGGTGGCCCGGTATGCAGTGTGCG
CCGCCGGGATCCTGCTCTCCATCTACGCCTACCACGTGGAGCGGGAGAAGGAGAGGGACCCGGAGCACCG
GGCCCTCTGCGACCTGGGGCCCTGGGTGAAGTGCTCCGCCGCCCTGGCCTCCAGATGGGGTCGAGGATTT
GGTCTTTTGGGTTCCATTTTTGGAAAAGATGGTGTATTAAACCAGCCAAACAGTGTCTTTGGACTTATAT
TTTATATACTACAGTTATTACTTGGCATGACAGCCAGCGCAGTTGCAGCTCTGGTCCTCATGACCTCCTC
CATTGTGTCTGTGGTGGGCTCTTTGTACCTGGCCTACATTCTGTACTTTGTGCTGAAAGAGTTTTGCATC
ATCTGCGTCACCACATATGTGCTGAACTTCCTCCTCCTCATCATCAATTACAAACGACTAGTTTATTTGA
ATGAGGCCTGGAAGCGACAGCTGCAGCCTAAGGAAGACTGA

Translation (176 aa):
MAAPVLLRVSVPRWERVARYAVCAAGILLSIYAYHVEREKERDPEHRALCDLGPWVKCSAALASRWGRGF
GLLGSIFGKDGVLNQPNSVFGLIFYILQLLLGMTASAVAALVLMTSSIVSVVGSLYLAYILYFVLKEFCI
ICVTTYVLNFLLLIINYKRLVYLNEAWKRQLQPKED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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