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Report for CCDS4832.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4832.1 Public Homo sapiens 6 TBC1D22B 24 110 108 CCDS HistoryNCBI Gene:55633Re-query CCDS DB by CCDS ID:4832.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4832.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373491.3 ENSP00000362590.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373491.3Link to Ensembl Protein Viewer:ENSP00000362590.3Re-query CCDS DB by Nucleotide ID:ENST00000373491Re-query CCDS DB by Protein ID:ENSP00000362590
Original member Current member NCBI NM_017772.4 NP_060242.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017772.4Link to Protein Sequence:NP_060242.2Re-query CCDS DB by Nucleotide ID:NM_017772Re-query CCDS DB by Protein ID:NP_060242Link to BLAST:NP_060242.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060242.2 505 Q9NU19 505 100% 0 0

Chromosomal Locations for CCDS 4832.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 37257918 37257973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37269594 37269650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37279304 37279611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37282185 37282364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37282882 37282952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37284336 37284464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37287007 37287072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37291243 37291357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37312918 37313024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37313816 37313891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37316703 37316830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37317111 37317206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37331044 37331172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGCCGCTGAGAACAGCAAGCAGTTTTGGAAGAGGAGCGCTAAGCTGCCGGGGAGCATTCAGCCTGTAT
ATGGAGCACAGCATCCTCCTCTTGACCCACGGCTCACCAAAAATTTCATTAAAGAACGATCAAAAGTCAA
CACAGTTCCTCTGAAGAATAAGAAGGCCTCCAGTTTTCATGAGTTTGCACGGAATACCAGTGATGCTTGG
GACATTGGCGATGATGAGGAAGAGGACTTTTCCTCACCTTCTTTCCAAACTCTGAACTCAAAAGTTGCTT
TGGCAACTGCAGCCCAAGTTCTAGAAAACCACAGCAAGCTGAGAGTAAAACCAGAACGGTCCCAGTCAAC
GACATCGGACGTCCCTGCCAACTACAAGGTCATAAAGTCCAGCAGTGATGCCCAGCTGTCCAGAAACTCT
AGTGATACATGCCTGAGGAACCCACTCCACAAACAGCAATCACTCCCTCTCCGGCCCATCATCCCCCTCG
TTGCCCGGATCTCGGATCAGAACGCTTCTGGGGCCCCCCCAATGACTGTCCGGGAGAAAACCCGCCTAGA
AAAATTCCGTCAACTTCTCTCCAGCCAGAACACTGACTTAGATGAACTGAGGAAGTGTAGCTGGCCAGGG
GTTCCCAGGGAGGTTCGACCTATAACCTGGAGACTCCTGTCGGGCTATCTCCCAGCAAACACTGAGAGGA
GGAAGTTGACCCTGCAGCGGAAGCGGGAGGAATATTTTGGCTTCATTGAACAGTATTATGACTCTCGAAA
CGAGGAACATCACCAGGATACCTACAGACAGATTCACATTGACATTCCAAGGACGAATCCTCTCATTCCG
TTGTTCCAGCAACCACTTGTACAGGAGATCTTTGAAAGAATTCTATTTATTTGGGCCATCCGCCACCCTG
CCAGTGGGTATGTCCAGGGAATTAATGACCTGGTCACTCCATTCTTTGTCGTCTTCCTCTCAGAATATGT
GGAAGAGGATGTGGAGAACTTTGACGTGACCAACTTGTCTCAAGACATGCTGCGAAGCATTGAGGCTGAC
AGCTTTTGGTGCATGAGCAAGCTGCTGGATGGAATCCAGGATAACTACACCTTTGCACAACCAGGAATCC
AGAAGAAGGTGAAGGCACTGGAAGAGCTTGTCAGCCGGATTGATGAGCAGGTACATAATCACTTCAGGAG
GTACGAGGTAGAATACCTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTTATGCGGGAGCTTCCTCTT
CGCTGCACCATCCGCCTGTGGGACACATATCAGTCTGAACCAGAAGGGTTCTCCCACTTTCATCTCTACG
TGTGTGCAGCCTTCTTGATCAAGTGGAGGAAAGAGATCTTGGATGAGGAGGATTTTCAGGGTCTCCTCAT
GCTGCTACAGAACCTACCTACAATACACTGGGGCAACGAAGAAATTGGGCTGCTTCTCGCCGAGGCATAC
AGACTCAAGTACATGTTTGCCGATGCCCCAAATCACTACCGCCGATAG

Translation (505 aa):
MAAENSKQFWKRSAKLPGSIQPVYGAQHPPLDPRLTKNFIKERSKVNTVPLKNKKASSFHEFARNTSDAW
DIGDDEEEDFSSPSFQTLNSKVALATAAQVLENHSKLRVKPERSQSTTSDVPANYKVIKSSSDAQLSRNS
SDTCLRNPLHKQQSLPLRPIIPLVARISDQNASGAPPMTVREKTRLEKFRQLLSSQNTDLDELRKCSWPG
VPREVRPITWRLLSGYLPANTERRKLTLQRKREEYFGFIEQYYDSRNEEHHQDTYRQIHIDIPRTNPLIP
LFQQPLVQEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFLSEYVEEDVENFDVTNLSQDMLRSIEAD
SFWCMSKLLDGIQDNYTFAQPGIQKKVKALEELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPL
RCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNLPTIHWGNEEIGLLLAEAY
RLKYMFADAPNHYRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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