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Report for CCDS34143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34143.1 Public Homo sapiens 5 BRIX1 24 110 108 CCDS HistoryNCBI Gene:55299Re-query CCDS DB by CCDS ID:34143.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336767.6 ENSP00000338862.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000336767.6Link to Ensembl Protein Viewer:ENSP00000338862.5Re-query CCDS DB by Nucleotide ID:ENST00000336767Re-query CCDS DB by Protein ID:ENSP00000338862
Original member Current member NCBI NM_018321.4 NP_060791.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018321.4Link to Protein Sequence:NP_060791.3Re-query CCDS DB by Nucleotide ID:NM_018321Re-query CCDS DB by Protein ID:NP_060791Link to BLAST:NP_060791.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060791.3 353 Q8TDN6 353 100% 0 0

Chromosomal Locations for CCDS 34143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34915739 34915897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34918364 34918475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34919840 34919883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34922217 34922287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34922539 34922588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34922695 34922768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34923001 34923051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34923133 34923234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34924847 34924975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34925226 34925495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGCGGCAACCAAGAGGAAACGGCGTGGAGGCTTTGCAGTTCAGGCGAAGAAGCCAAAAAGAAACGAAA
TAGATGCGGAGCCGCCAGCTAAGCGGCACGCCACAGCAGAGGAGGTGGAGGAAGAAGAGAGGGACCGGAT
CCCAGGCCCCGTTTGCAAGGGAAAGTGGAAAAATAAGGAACGGATTCTCATCTTTTCTTCCAGAGGAATA
AATTTTAGAACAAGACATTTAATGCAGGACTTGAGAATGTTGATGCCTCATTCTAAAGCAGATACTAAAA
TGGATCGTAAGGATAAGCTATTTGTGATTAACGAGGTTTGTGAAATGAAGAACTGTAATAAATGCATCTA
TTTTGAAGCTAAGAAAAAACAGGATCTCTATATGTGGCTTTCAAATTCACCTCACGGACCATCTGCTAAA
TTCCTTGTTCAAAATATTCATACCCTCGCTGAACTGAAGATGACTGGAAACTGTTTGAAAGGTTCTCGGC
CCCTTTTGTCTTTTGACCCTGCTTTTGATGAATTACCACATTATGCTTTGTTAAAAGAACTCTTAATTCA
GATCTTTAGTACACCACGGTATCATCCCAAAAGCCAACCATTTGTGGACCACGTGTTTACTTTCACCATT
TTGGATAATAGGATATGGTTTCGGAACTTTCAGATCATAGAAGAAGATGCTGCTCTTGTAGAAATAGGAC
CTCGTTTTGTCTTAAATCTCATAAAGATTTTCCAGGGAAGTTTTGGAGGACCAACTTTATATGAAAATCC
TCACTACCAGTCACCAAACATGCATCGGCGTGTCATAAGATCCATCACAGCTGCAAAATACAGAGAGAAA
CAGCAAGTGAAAGATGTGCAAAAACTGAGAAAGAAAGAGCCGAAGACTCTTCTTCCACATGATCCCACTG
CAGATGTTTTTGTAACACCAGCTGAGGAGAAACCAATAGAAATACAGTGGGTAAAACCAGAGCCAAAAGT
TGATTTGAAAGCAAGAAAGAAACGGATTTACAAAAGGCAAAGAAAAATGAAACAGAGGATGGACAGTGGG
AAAACAAAATAA

Translation (353 aa):
MAATKRKRRGGFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGI
NFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAK
FLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTI
LDNRIWFRNFQIIEEDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREK
QQVKDVQKLRKKEPKTLLPHDPTADVFVTPAEEKPIEIQWVKPEPKVDLKARKKRIYKRQRKMKQRMDSG
KTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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