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Report for CCDS6098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6098.1 Public Homo sapiens 8 BRF2 24 110 108 CCDS HistoryNCBI Gene:55290Re-query CCDS DB by CCDS ID:6098.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6098.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000220659.11 ENSP00000220659.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000220659.11Link to Ensembl Protein Viewer:ENSP00000220659.6Re-query CCDS DB by Nucleotide ID:ENST00000220659Re-query CCDS DB by Protein ID:ENSP00000220659
Original member Current member NCBI NM_018310.4 NP_060780.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018310.4Link to Protein Sequence:NP_060780.2Re-query CCDS DB by Nucleotide ID:NM_018310Re-query CCDS DB by Protein ID:NP_060780Link to BLAST:NP_060780.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060780.2 419 Q9HAW0-1 419 100% 0 0

Chromosomal Locations for CCDS 6098.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 37844490 37845213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37846854 37847175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37848596 37848655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 37849630 37849783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGCCAGGCAGAGGCCGCTGCCCGGACTGCGGCTCCACGGAGCTGGTGGAAGACTCGCACTATTCGCAGA
GCCAGCTGGTGTGCTCCGACTGCGGCTGCGTGGTCACCGAGGGGGTCCTTACCACTACCTTCAGCGACGA
GGGCAATCTCCGAGAGGTAACATATTCCCGAAGCACAGGGGAAAACGAACAAGTTAGTCGCAGCCAGCAA
CGAGGTCTCCGGCGAGTGAGAGACCTTTGTCGAGTTCTGCAGTTGCCACCAACATTTGAGGATACCGCGG
TTGCCTACTACCAACAGGCATATCGGCACTCTGGCATCCGAGCGGCCAGGCTGCAAAAGAAGGAGGTGTT
GGTTGGGTGCTGCGTCTTAATCACCTGCCGACAGCATAACTGGCCCCTAACAATGGGGGCCATCTGCACG
CTGTTGTATGCAGATTTGGATGTGTTTTCTAGCACTTACATGCAGATAGTGAAGCTCCTGGGACTGGATG
TGCCATCTCTGTGCTTGGCAGAACTGGTGAAGACCTATTGCAGCAGCTTCAAACTGTTCCAAGCTTCACC
TTCTGTGCCAGCCAAATACGTGGAAGACAAAGAGAAGATGCTGTCTCGAACAATGCAGTTGGTGGAGCTG
GCAAATGAGACGTGGCTGGTGACCGGGAGGCATCCCTTGCCCGTCATCACTGCTGCGACTTTCCTGGCTT
GGCAGTCGCTGCAGCCTGCAGATCGGCTTTCATGTTCCCTTGCCCGATTTTGTAAATTGGCAAATGTGGA
CCTGCCCTACCCGGCGTCCTCCCGCCTGCAGGAGCTGCTGGCTGTGCTGCTGCGGATGGCTGAGCAGCTG
GCCTGGTTACGAGTTCTGAGACTTGACAAACGGTCTGTGGTGAAGCACATCGGTGACCTTCTCCAGCACC
GCCAGTCACTGGTCCGCTCTGCCTTTCGGGATGGGACAGCAGAAGTGGAGACCCGAGAGAAGGAGCCACC
GGGGTGGGGACAGGGGCAAGGAGAAGGGGAGGTGGGAAATAATTCCTTAGGTTTACCCCAGGGGAAGCGG
CCGGCCAGTCCTGCCCTTCTCTTGCCACCCTGCATGTTGAAGTCCCCGAAGCGGATCTGCCCTGTACCCC
CTGTCTCCACTGTCACTGGAGATGAGAACATTTCTGATAGTGAAATAGAACAGTATTTGCGTACCCCTCA
GGAAGTTAGGGACTTTCAGAGAGCCCAGGCTGCTAGACAGGCTGCCACGAGTGTCCCTAACCCTCCCTGA

Translation (419 aa):
MPGRGRCPDCGSTELVEDSHYSQSQLVCSDCGCVVTEGVLTTTFSDEGNLREVTYSRSTGENEQVSRSQQ
RGLRRVRDLCRVLQLPPTFEDTAVAYYQQAYRHSGIRAARLQKKEVLVGCCVLITCRQHNWPLTMGAICT
LLYADLDVFSSTYMQIVKLLGLDVPSLCLAELVKTYCSSFKLFQASPSVPAKYVEDKEKMLSRTMQLVEL
ANETWLVTGRHPLPVITAATFLAWQSLQPADRLSCSLARFCKLANVDLPYPASSRLQELLAVLLRMAEQL
AWLRVLRLDKRSVVKHIGDLLQHRQSLVRSAFRDGTAEVETREKEPPGWGQGQGEGEVGNNSLGLPQGKR
PASPALLLPPCMLKSPKRICPVPPVSTVTGDENISDSEIEQYLRTPQEVRDFQRAQAARQAATSVPNPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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