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Report for CCDS2566.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2566.1 Public Homo sapiens 3 ARL8B 24 110 108 CCDS HistoryNCBI Gene:55207Re-query CCDS DB by CCDS ID:2566.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2566.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256496.8 ENSP00000256496.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000256496.8Link to Ensembl Protein Viewer:ENSP00000256496.3Re-query CCDS DB by Nucleotide ID:ENST00000256496Re-query CCDS DB by Protein ID:ENSP00000256496
Original member Current member NCBI NM_018184.3 NP_060654.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018184.3Link to Protein Sequence:NP_060654.1Re-query CCDS DB by Nucleotide ID:NM_018184Re-query CCDS DB by Protein ID:NP_060654Link to BLAST:NP_060654.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060654.1 186 Q9NVJ2-1 186 100% 0 0

Chromosomal Locations for CCDS 2566.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 5122466 5122588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 5170503 5170583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 5172150 5172223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 5172647 5172740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 5174017 5174084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 5174344 5174414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 5178664 5178713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGCTGGCGCTCATCTCCCGCCTGCTGGACTGGTTCCGTTCGCTCTTCTGGAAGGAAGAGATGGAGCTGA
CGCTCGTGGGGCTGCAGTACTCGGGCAAGACCACCTTCGTCAATGTCATCGCGTCAGGTCAATTCAGTGA
AGATATGATACCCACAGTGGGCTTCAACATGAGGAAGGTAACTAAAGGTAACGTCACAATAAAGATCTGG
GACATAGGAGGACAACCCCGATTTCGAAGCATGTGGGAGCGGTATTGCAGAGGAGTCAATGCTATTGTTT
ACATGATAGATGCTGCAGATCGTGAAAAGATAGAAGCTTCCCGAAATGAGCTACATAATCTTCTAGATAA
ACCACAGTTACAAGGAATTCCAGTGCTAGTGCTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATGAG
AAACAGCTAATTGAAAAAATGAATCTGTCTGCTATTCAGGATAGAGAAATTTGCTGCTATTCAATTTCTT
GCAAAGAAAAGGATAATATAGATATCACACTTCAGTGGCTTATTCAGCATTCAAAATCTAGAAGAAGCTG
A

Translation (186 aa):
MLALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIW
DIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDE
KQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKSRRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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