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Report for CCDS3431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3431.1 Public Homo sapiens 4 LGI2 24 110 108 CCDS HistoryNCBI Gene:55203Re-query CCDS DB by CCDS ID:3431.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3431.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382114.9 ENSP00000371548.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382114.9Link to Ensembl Protein Viewer:ENSP00000371548.4Re-query CCDS DB by Nucleotide ID:ENST00000382114Re-query CCDS DB by Protein ID:ENSP00000371548
Original member Current member NCBI NM_018176.4 NP_060646.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018176.4Link to Protein Sequence:NP_060646.2Re-query CCDS DB by Nucleotide ID:NM_018176Re-query CCDS DB by Protein ID:NP_060646Link to BLAST:NP_060646.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060646.2 545 Q8N0V4 545 100% 0 0

Chromosomal Locations for CCDS 3431.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 25003451 25004268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25012335 25012499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25017989 25018158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25019167 25019238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25024820 25024891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25026868 25026939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25028507 25028578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25030497 25030693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGGCGCTGCGGAGAGGCGGCTGCGGAGCGCTCGGGCTGCTGCTGCTGCTGCTGGGCGCCGCGTGCCTGA
TACCGCGGAGCGCGCAGGTGAGGCGGCTGGCGCGCTGCCCCGCCACTTGCAGCTGTACCAAGGAGTCTAT
CATCTGCGTGGGCTCTTCCTGGGTGCCCAGGATCGTGCCGGGCGACATCAGCTCCCTGAGCCTGGTAAAT
GGGACGTTTTCAGAAATCAAGGACCGAATGTTTTCCCATCTGCCTTCTCTGCAGCTGCTATTGCTGAATT
CTAACTCATTCACGATCATCCGGGATGATGCTTTTGCTGGACTTTTTCATCTTGAATACCTGTTCATTGA
AGGGAACAAAATAGAAACCATTTCAAGAAATGCCTTTCGTGGCCTCCGTGACCTGACTCACCTTTCTTTG
GCCAATAACCACATAAAAGCACTACCAAGGGATGTCTTCAGTGATTTAGACTCTCTGATTGAACTAGATT
TGAGGGGTAATAAATTTGAATGTGACTGCAAAGCCAAGTGGCTATACCTGTGGTTGAAGATGACAAATTC
CACCGTTTCTGATGTGCTGTGTATTGGTCCACCAGAGTATCAGGAAAAGAAGCTAAATGACGTGACCAGC
TTTGACTATGAATGCACAACTACAGATTTTGTTGTTCATCAGACTTTACCCTACCAGTCGGTTTCAGTGG
ATACGTTCAACTCCAAGAACGATGTGTACGTGGCCATCGCGCAGCCCAGCATGGAGAACTGCATGGTGCT
GGAGTGGGACCACATTGAAATGAATTTCCGGAGCTATGACAACATTACAGGTCAGTCCATCGTGGGCTGT
AAGGCCATTCTCATCGATGATCAGGTCTTTGTGGTGGTAGCCCAGCTCTTCGGTGGCTCTCACATTTACA
AATACGACGAGAGTTGGACCAAATTTGTCAAATTCCAAGACATAGAGGTCTCTCGCATTTCCAAGCCCAA
TGACATCGAGCTGTTTCAGATCGACGACGAGACGTTCTTTGTCATCGCAGACAGCTCAAAGGCTGGTCTG
TCCACAGTTTATAAATGGAACAGCAAAGGATTCTATTCTTACCAGTCACTGCACGAGTGGTTCAGGGACA
CGGATGCGGAGTTTGTTGATATCGATGGAAAATCGCATCTCATCCTGTCCAGCCGCTCCCAGGTCCCCAT
CATCCTCCAGTGGAATAAAAGCTCTAAGAAGTTTGTCCCCCATGGTGACATCCCCAACATGGAGGACGTA
CTGGCTGTGAAGAGCTTCCGAATGCAAAATACCCTCTACCTTTCCCTTACCCGCTTCATCGGGGACTCCC
GGGTCATGAGGTGGAACAGTAAGCAGTTTGTGGAGATCCAAGCTCTTCCATCCCGGGGGGCCATGACCCT
GCAGCCCTTTTCTTTTAAAGATAATCACTACCTGGCCCTGGGGAGTGACTATACATTCTCTCAGATATAC
CAGTGGGATAAAGAGAAGCAGCTATTCAAAAAGTTTAAGGAGATTTACGTGCAGGCGCCTCGTTCATTCA
CAGCTGTCTCCACCGACAGGAGAGATTTCTTTTTTGCATCCAGTTTCAAAGGGAAAACAAAGATTTTTGA
ACATATAATTGTTGACTTAAGTTTGTGA

Translation (545 aa):
MALRRGGCGALGLLLLLLGAACLIPRSAQVRRLARCPATCSCTKESIICVGSSWVPRIVPGDISSLSLVN
GTFSEIKDRMFSHLPSLQLLLLNSNSFTIIRDDAFAGLFHLEYLFIEGNKIETISRNAFRGLRDLTHLSL
ANNHIKALPRDVFSDLDSLIELDLRGNKFECDCKAKWLYLWLKMTNSTVSDVLCIGPPEYQEKKLNDVTS
FDYECTTTDFVVHQTLPYQSVSVDTFNSKNDVYVAIAQPSMENCMVLEWDHIEMNFRSYDNITGQSIVGC
KAILIDDQVFVVVAQLFGGSHIYKYDESWTKFVKFQDIEVSRISKPNDIELFQIDDETFFVIADSSKAGL
STVYKWNSKGFYSYQSLHEWFRDTDAEFVDIDGKSHLILSSRSQVPIILQWNKSSKKFVPHGDIPNMEDV
LAVKSFRMQNTLYLSLTRFIGDSRVMRWNSKQFVEIQALPSRGAMTLQPFSFKDNHYLALGSDYTFSQIY
QWDKEKQLFKKFKEIYVQAPRSFTAVSTDRRDFFFASSFKGKTKIFEHIIVDLSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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