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Report for CCDS406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
406.1 Public Homo sapiens 1 EVA1B 24 110 108 CCDS HistoryNCBI Gene:55194Re-query CCDS DB by CCDS ID:406.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 406.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000270824.1 ENSP00000270824.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000270824.1Link to Ensembl Protein Viewer:ENSP00000270824.1Re-query CCDS DB by Nucleotide ID:ENST00000270824Re-query CCDS DB by Protein ID:ENSP00000270824
Original member Current member EBI ENST00000490466.2 ENSP00000507013.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000490466.2Link to Ensembl Protein Viewer:ENSP00000507013.1Re-query CCDS DB by Nucleotide ID:ENST00000490466Re-query CCDS DB by Protein ID:ENSP00000507013
Original member Current member NCBI NM_001304762.2 NP_001291691.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001304762.2Link to Protein Sequence:NP_001291691.1Re-query CCDS DB by Nucleotide ID:NM_001304762Re-query CCDS DB by Protein ID:NP_001291691Link to BLAST:NP_001291691.1
Original member Current member NCBI NM_018166.3 NP_060636.1 Accepted alive Link to Nucleotide Sequence:NM_018166.3Link to Protein Sequence:NP_060636.1Re-query CCDS DB by Nucleotide ID:NM_018166Re-query CCDS DB by Protein ID:NP_060636Link to BLAST:NP_060636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291691.1 165 Q9NVM1 165 100% 0 0
NP_060636.1 165 Q9NVM1 165 100% 0 0

Chromosomal Locations for CCDS 406.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36322295 36322725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36322971 36323037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGGATGCCCCGCGAAGGGACATGGAGTTGCTCAGCAACAGCCTGGCTGCCTACGCGCACATCCGCGCCA
ACCCCGAGAGCTTCGGCCTCTACTTCGTGCTGGGCGTCTGCTTCGGCCTGCTGCTCACCCTCTGCCTGCT
CGTCATCAGCATCTCGTGGGCGCCCCGCCCGCGGCCCCGGGGCCCGGCTCAGCGCCGGGACCCCCGCAGC
AGCACCCTGGAGCCCGAGGACGACGACGAGGACGAGGAGGACACGGTGACTCGGCTGGGCCCCGACGACA
CGCTGCCGGGCCCCGAGCTGTCCGCAGAGCCGGACGGGCCCCTCAACGTCAACGTCTTCACGTCGGCGGA
GGAGCTGGAGCGGGCGCAGCGGCTGGAGGAGCGCGAACGGATCCTGCGGGAGATCTGGCGCACCGGGCAG
CCGGACCTGCTGGGCACAGGCACGCTGGGGCCCAGCCCCACGGCCACGGGCACCCTGGGCCGCATGCACT
ATTACTGA

Translation (165 aa):
MDAPRRDMELLSNSLAAYAHIRANPESFGLYFVLGVCFGLLLTLCLLVISISWAPRPRPRGPAQRRDPRS
STLEPEDDDEDEEDTVTRLGPDDTLPGPELSAEPDGPLNVNVFTSAEELERAQRLEERERILREIWRTGQ
PDLLGTGTLGPSPTATGTLGRMHYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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