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Report for CCDS18423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18423.1 Public Mus musculus 4 Pars2 23 108 98 CCDS HistoryNCBI Gene:230577Re-query CCDS DB by CCDS ID:18423.1Re-query CCDS DB by GeneID:230577See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 18423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058905.7 ENSMUSP00000053160.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058905.7Link to Ensembl Protein Viewer:ENSMUSP00000053160.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058905Re-query CCDS DB by Protein ID:ENSMUSP00000053160
Original member Current member NCBI NM_001285784.1 NP_001272713.1 Accepted alive Link to Nucleotide Sequence:NM_001285784.1Link to Protein Sequence:NP_001272713.1Re-query CCDS DB by Nucleotide ID:NM_001285784Re-query CCDS DB by Protein ID:NP_001272713Link to BLAST:NP_001272713.1
Original member Current member NCBI NM_172272.2 NP_758476.2 Accepted alive Link to Nucleotide Sequence:NM_172272.2Link to Protein Sequence:NP_758476.2Re-query CCDS DB by Nucleotide ID:NM_172272Re-query CCDS DB by Protein ID:NP_758476Link to BLAST:NP_758476.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272713.1 475 Q8CFI5 475 100% 0 0
NP_758476.2 475 Q8CFI5 475 100% 0 0

Chromosomal Locations for CCDS 18423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 106653131 106654558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1428 nt):
ATGGAAGGTCTGCTGACAAGATGCAGAACACTGTCTGCCTTGGCTGCCTGCAGCCTCCGTCACTGCAGAT
ACATCATCCACAAGTGTTACCATCGTGCGCCCGGGAGAGGGCAGCGCTTGGTATTATCCCGCATGTTCCA
GCCTCAGAACCTTCGGGAAGACCAGGTGCTTTCTCTGGAGGGCAGAGCTAGCGACCTGACCTGTAAGAGC
CAGCGGCTGATGCTGCAAGTGGGCCTGATCCTTCCAGCCAGCCCTGGCTGTTACCACCTCATGCCCTATA
CAGTGCGTGCCGTGGAGAAGCTTGTGCGGGTGATAGACCAGGAGATGCAGGCCATCGGCGGGCAGAAAAT
CAACATGCCCAGCCTCAGCCCAGCTGAGCTGTGGCGGGCCACCAGCCGCTGGGACCTGATGGGCAGGGAG
CTGCTGAGACTGAGAGACAGGCACGGCAAAGAGTACTGCTTGGGACCGACTCATGAGGAAGCGGTTACAG
CCCTGGTTGCCTCCCAGAAGAAACTTTCCTACAAGCAGCTCCCCTTGTTGTTGTACCAGGTTACAAGGAA
GTTTCGGGATGAGCCCAGGCCCCGGTTTGGTCTTCTCCGTGGCCGGGAGTTCTATATGAAGGACATGTAC
ACCTTTGATTCCTCCTCTGAGGCTGCCCAGGAAACCTACGGCCTGGTGTGTGATGCTTACTGTAGGCTGT
TTGACAGGCTGGGATTGCAATGGATGAAGGCCAGGGCAGATGTGGGCAGCATCGGGGGCACGATGTCCCA
TGAATTCCAGCTACCAGTGGACATTGGAGAGGACCGCCTTGTGGTCTGTCCCAGCTGCCACTTCTCCGCC
AACACAGAGATACTAGACTTGTCACAAAAAATCTGCCCTGACTGCCAGGGTCCACTGACAGAAACCAAAG
GCATTGAGGTGGGGCACACATTCTACCTTAGTACCAAGTACTCTTCCATTTTCAATGCCCTCTTTACCAA
TGCCCATGGGGAATCTTTGCTGGCTGAAATGGGGTGCTACGGGCTGGGAGTCACTCGGATCCTGGCTGCA
GCCATCGAAGTTCTCTCTACGGAAGACTGCATCCGCTGGCCCCGCCTCCTTGCCCCTTACCAAGTCTGTG
TCATCCCCCCTAAGAAAGGCAGCAAGGAGACAGCAGCCACAGAGATTGTGGAGAAGTTATATGATGACAT
CATGGAGGCTGTGCCCCAGCTCCGAGGGGAGGTCCTGCTGGACGACAGGACCCACCTGACCATTGGAAAC
AGACTGAAAGATGCCAACAAGCTTGGCTACCCCTTTGTGATCATTGCGGGCAAGAGGGCCTTGGAGGACC
CAGCACACTTTGAGGTTTGGTCTCAGAACACTGGTGAGGTGGTCTTCCTCACCAAAGAGGGAGTCATGGA
ACTACTAACTGGAGTGCATGTTGTCTAG

Translation (475 aa):
MEGLLTRCRTLSALAACSLRHCRYIIHKCYHRAPGRGQRLVLSRMFQPQNLREDQVLSLEGRASDLTCKS
QRLMLQVGLILPASPGCYHLMPYTVRAVEKLVRVIDQEMQAIGGQKINMPSLSPAELWRATSRWDLMGRE
LLRLRDRHGKEYCLGPTHEEAVTALVASQKKLSYKQLPLLLYQVTRKFRDEPRPRFGLLRGREFYMKDMY
TFDSSSEAAQETYGLVCDAYCRLFDRLGLQWMKARADVGSIGGTMSHEFQLPVDIGEDRLVVCPSCHFSA
NTEILDLSQKICPDCQGPLTETKGIEVGHTFYLSTKYSSIFNALFTNAHGESLLAEMGCYGLGVTRILAA
AIEVLSTEDCIRWPRLLAPYQVCVIPPKKGSKETAATEIVEKLYDDIMEAVPQLRGEVLLDDRTHLTIGN
RLKDANKLGYPFVIIAGKRALEDPAHFEVWSQNTGEVVFLTKEGVMELLTGVHVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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