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Report for CCDS19317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19317.1 Public Mus musculus 5 Tmem33 23 108 98 CCDS HistoryNCBI Gene:67878Re-query CCDS DB by CCDS ID:19317.1Re-query CCDS DB by GeneID:67878See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037918.11 ENSMUSP00000042852.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037918.11Link to Ensembl Protein Viewer:ENSMUSP00000042852.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037918Re-query CCDS DB by Protein ID:ENSMUSP00000042852
Original member Current member EBI ENSMUST00000161369.2 ENSMUSP00000124390.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161369.2Link to Ensembl Protein Viewer:ENSMUSP00000124390.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161369Re-query CCDS DB by Protein ID:ENSMUSP00000124390
Original member Current member NCBI NM_001285452.1 NP_001272381.1 Accepted alive Link to Nucleotide Sequence:NM_001285452.1Link to Protein Sequence:NP_001272381.1Re-query CCDS DB by Nucleotide ID:NM_001285452Re-query CCDS DB by Protein ID:NP_001272381Link to BLAST:NP_001272381.1
Original member Current member NCBI NM_028975.4 NP_083251.2 Accepted alive Link to Nucleotide Sequence:NM_028975.4Link to Protein Sequence:NP_083251.2Re-query CCDS DB by Nucleotide ID:NM_028975Re-query CCDS DB by Protein ID:NP_083251Link to BLAST:NP_083251.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272381.1 247 Q9CR67 247 100% 0 0
NP_083251.2 247 Q9CR67 247 100% 0 0

Chromosomal Locations for CCDS 19317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 67260989 67261033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67263730 67263824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67264270 67264457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67267302 67267369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67268511 67268644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67284140 67284223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67286096 67286225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGCGGATACGACCCCGAACGGCCCCCAAGGGGCGGGCGCTGTGCAATTCATGATGACCAATAAATTGG
ACACAGCAATGTGGCTTTCTCGCCTGTTCACAGTTTATTGCTCCGCTCTGTTCGTTCTGCCTCTTCTTGG
GTTGCATGAAGCAGCGAGCTTTTACCAGCGTGCTTTGCTGGCCAATGCTCTGACCAGCGCTCTGAGGCTG
CATCAGAGATTACCTCACTTCCAGTTGAGCAGAGCGTTCCTGGCTCAGGCCTTGTTAGAGGACAGCTGCC
ACTACCTGCTGTATTCACTCATCTTCGTCAACTCCTACCCTGTCACAATGAGTATTTTTCCAGTCTTGTT
ATTTTCTTTGCTCCATGCTGCCACATACACTAAGAAGGTCCTGGACGCAAAGGGTTCAAATAGTTTACCT
CTGTTGAGATCATTCTTGGATAAATTAAGTACTAACCAACAAAATATTCTGAAATTCATCGCTTGTAATG
AAATATTCTTGATGCCTGCTACAGTTTTTATGCTCTTTAGTGGCCAAGGAAGTTTGCTCCAGCCTTTTAT
ATATTATAGATTTCTTACTCTTCGATATTCCTCTAGAAGAAATCCATATTGTCGGAACTTGTTTAATGAA
CTGAGGATTGTGGTTGAACACATTATTATGAAGCCCTCCTGCCCACTGTTTGTGAGAAGACTATGTCTCC
AGAGCATCGCCTTTATCAGCAGACTGGCACCAACAGTTGCGTAG

Translation (247 aa):
MADTTPNGPQGAGAVQFMMTNKLDTAMWLSRLFTVYCSALFVLPLLGLHEAASFYQRALLANALTSALRL
HQRLPHFQLSRAFLAQALLEDSCHYLLYSLIFVNSYPVTMSIFPVLLFSLLHAATYTKKVLDAKGSNSLP
LLRSFLDKLSTNQQNILKFIACNEIFLMPATVFMLFSGQGSLLQPFIYYRFLTLRYSSRRNPYCRNLFNE
LRIVVEHIIMKPSCPLFVRRLCLQSIAFISRLAPTVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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