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Report for CCDS39312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39312.1 Public Mus musculus 5 Lat2 23 108 98 CCDS HistoryNCBI Gene:56743Re-query CCDS DB by CCDS ID:39312.1Re-query CCDS DB by GeneID:56743See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39312.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036362.12 ENSMUSP00000046900.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036362.12Link to Ensembl Protein Viewer:ENSMUSP00000046900.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000036362Re-query CCDS DB by Protein ID:ENSMUSP00000046900
Original member Current member EBI ENSMUST00000200998.3 ENSMUSP00000143977.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200998.3Link to Ensembl Protein Viewer:ENSMUSP00000143977.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200998Re-query CCDS DB by Protein ID:ENSMUSP00000143977
Original member Current member NCBI NM_020044.3 NP_064428.1 Accepted alive Link to Nucleotide Sequence:NM_020044.3Link to Protein Sequence:NP_064428.1Re-query CCDS DB by Nucleotide ID:NM_020044Re-query CCDS DB by Protein ID:NP_064428Link to BLAST:NP_064428.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064428.1 203 Q9JHL0-1 203 100% 0 0

Chromosomal Locations for CCDS 39312.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134602587 134602669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134603099 134603170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134603421 134603480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134604746 134604801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134605932 134605962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134606046 134606081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134606361 134606392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134606560 134606620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134606778 134606821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134608155 134608194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134608808 134608904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGAGTGCCGAGCTGGAGCTGCTGTGGCCGGTGTCGGGATTATTGCTGCTGCTGTTGGGGGCCACAGCCT
GGCTGTGTGTCCACTGCTCCCGTCCAGGAGTGAAGAGAAATGAGAAAATCTACGAGCAGAGGAACCGGCA
AGAAAATGCACAGAGCTCAGCTGCGGCTCAGACATACTCCCTGGCCAGGCAGGTGTGGCCAGGACCCCAG
ATGGACACAGCTCCAAACAAGTCATTTGAAAGGAAGAACAAGATGCTGTTCTCCCACCTTGAGGGTCCTG
AGTCCCCTAGGTACCAGAACTTCTACAAAGGAAGTAACCAGGAGCCTGATGCTGCCTATGTAGACCCCAT
CCCTACAAACTACTACAACTGGGGATGTTTCCAGAAGCCCTCAGAAGACGACGATTCCAACTCCTACGAG
AATGTGCTCGTCTGCAAGCCCAGCACCCCCGAGTCAGGTGTCGAGGACTTTGAGGATTACCAGAACTCAG
TATCCATCCATCAGTGGCGAGAGTCCAAGAGGACTATGGGTGCACCAATGTCCCTATCAGGAAGCCCAGA
TGAGGAGCCAGACTATGTGAATGGGGATGTGGCCGCAGCAGAGAACATCTAG

Translation (203 aa):
MSAELELLWPVSGLLLLLLGATAWLCVHCSRPGVKRNEKIYEQRNRQENAQSSAAAQTYSLARQVWPGPQ
MDTAPNKSFERKNKMLFSHLEGPESPRYQNFYKGSNQEPDAAYVDPIPTNYYNWGCFQKPSEDDDSNSYE
NVLVCKPSTPESGVEDFEDYQNSVSIHQWRESKRTMGAPMSLSGSPDEEPDYVNGDVAAAENI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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