NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
402.1 Public Homo sapiens 1 ADPRS 24 110 108 CCDS HistoryNCBI Gene:54936Re-query CCDS DB by CCDS ID:402.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 402.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373178.5 ENSP00000362273.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373178.5Link to Ensembl Protein Viewer:ENSP00000362273.4Re-query CCDS DB by Nucleotide ID:ENST00000373178Re-query CCDS DB by Protein ID:ENSP00000362273
Original member Current member NCBI NM_017825.3 NP_060295.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017825.3Link to Protein Sequence:NP_060295.1Re-query CCDS DB by Nucleotide ID:NM_017825Re-query CCDS DB by Protein ID:NP_060295Link to BLAST:NP_060295.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060295.1 363 Q9NX46 363 100% 0 0

Chromosomal Locations for CCDS 402.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36088905 36089115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36091244 36091340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36091618 36091825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36091910 36092094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36092422 36092522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36093097 36093386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGGCCGCAGCGGCGATGGCGGCAGCGGCAGGTGGAGGGGCTGGCGCGGCCCGCTCCCTCTCGCGCTTCC
GAGGCTGCCTGGCTGGCGCGCTGCTCGGGGACTGCGTGGGCTCCTTCTACGAGGCCCACGACACCGTCGA
CCTGACGTCAGTCCTGCGTCATGTCCAGAGTCTGGAGCCGGACCCCGGCACGCCCGGGAGTGAGCGGACA
GAAGCCTTGTACTACACAGATGACACAGCCATGGCCAGGGCCCTGGTGCAGTCCCTGCTAGCCAAGGAGG
CCTTTGACGAGGTGGACATGGCTCACAGATTTGCTCAGGAGTACAAGAAAGACCCTGACAGGGGCTATGG
TGCTGGAGTAGTCACTGTCTTCAAGAAGCTCCTGAACCCCAAATGTCGCGATGTCTTTGAGCCTGCCCGG
GCCCAGTTTAACGGGAAAGGCTCCTATGGCAATGGAGGTGCCATGCGGGTGGCTGGCATCTCCCTGGCCT
ATAGCAGTGTCCAGGATGTGCAGAAGTTTGCCCGGCTCTCGGCCCAGCTGACACACGCCTCCTCCCTGGG
TTACAATGGCGCCATCCTGCAGGCCCTGGCTGTGCACCTGGCCTTGCAGGGCGAGTCTTCCAGCGAGCAC
TTTCTCAAGCAACTCCTGGGCCACATGGAGGATCTGGAGGGTGATGCCCAGTCCGTCTTGGATGCCAGGG
AGTTGGGCATGGAGGAGCGTCCATACTCCAGCCGCCTGAAGAAGATTGGAGAGCTTCTAGACCAGGCATC
GGTGACCAGGGAGGAAGTGGTGTCTGAGCTAGGGAATGGCATTGCTGCCTTTGAGTCGGTACCCACCGCC
ATCTACTGCTTCCTACGCTGCATGGAGCCAGACCCTGAGATCCCTTCTGCCTTCAATAGCCTCCAAAGGA
CTCTCATTTATTCCATCTCACTTGGTGGGGACACAGACACCATTGCCACCATGGCTGGGGCCATTGCTGG
TGCCTACTATGGGATGGATCAGGTGCCAGAGAGCTGGCAGCAAAGCTGTGAAGGCTACGAGGAGACAGAC
ATCCTGGCCCAAAGCCTGCACCGTGTCTTCCAGAAGAGTTGA

Translation (363 aa):
MAAAAMAAAAGGGAGAARSLSRFRGCLAGALLGDCVGSFYEAHDTVDLTSVLRHVQSLEPDPGTPGSERT
EALYYTDDTAMARALVQSLLAKEAFDEVDMAHRFAQEYKKDPDRGYGAGVVTVFKKLLNPKCRDVFEPAR
AQFNGKGSYGNGGAMRVAGISLAYSSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSSEH
FLKQLLGHMEDLEGDAQSVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELGNGIAAFESVPTA
IYCFLRCMEPDPEIPSAFNSLQRTLIYSISLGGDTDTIATMAGAIAGAYYGMDQVPESWQQSCEGYEETD
ILAQSLHRVFQKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH