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Report for CCDS14527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14527.1 Public Homo sapiens X NUP62CL 24 110 108 CCDS HistoryNCBI Gene:54830Re-query CCDS DB by CCDS ID:14527.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14527.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372466.8 ENSP00000361544.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372466.8Link to Ensembl Protein Viewer:ENSP00000361544.4Re-query CCDS DB by Nucleotide ID:ENST00000372466Re-query CCDS DB by Protein ID:ENSP00000361544
Original member Current member NCBI NM_017681.3 NP_060151.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017681.3Link to Protein Sequence:NP_060151.2Re-query CCDS DB by Nucleotide ID:NM_017681Re-query CCDS DB by Protein ID:NP_060151Link to BLAST:NP_060151.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060151.2 184 Q9H1M0-1 184 100% 0 0

Chromosomal Locations for CCDS 14527.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 107147785 107147809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107153172 107153306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107153454 107153503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107154096 107154246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107167649 107167784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 107175089 107175146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGCAGTTTACCTCAATATCAAATTCTTTGACCTCCACTGCTGCTATTGGGCTCTCATTTACAACTTCAA
CGACTACCACCGCCACTTTCACCACCAACACTACTACCACAATCACCAGTGGCTTTACTGTGAACCAAAA
CCAACTGTTATCAAGAGGGTTTGAAAACCTTGTACCTTATACTTCAACTGTTAGTGTAGTAGCAACTCCT
GTGATGACATATGGTCATCTGGAGGGTCTTATAAATGAGTGGAACCTTGAGCTGGAAGATCAAGAGAAGT
ACTTTCTTCTCCAGGCCACTCAGGTCAATGCTTGGGACCATACATTGATTGAGAATGGTGAGATGATTCG
TATTTTACATGGAGAAGTGAACAAAGTGAAACTGGATCAGAAAAGATTGGAACAAGAATTGGATTTTATC
CTGTCACAGCAGCAGGAACTAGAATTTCTGTTGACTTATTTAGAGGAGTCTACGCGTGACCAGAGTGGAC
TTCATTATCTGCAGGATGCAGATGAGGAGCATGTGGAGATCTCCACCAGATCTGCAGAATTCTGA

Translation (184 aa):
MQFTSISNSLTSTAAIGLSFTTSTTTTATFTTNTTTTITSGFTVNQNQLLSRGFENLVPYTSTVSVVATP
VMTYGHLEGLINEWNLELEDQEKYFLLQATQVNAWDHTLIENGEMIRILHGEVNKVKLDQKRLEQELDFI
LSQQQELEFLLTYLEESTRDQSGLHYLQDADEEHVEISTRSAEF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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