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Report for CCDS5843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5843.1 Public Homo sapiens 7 CHRM2 24 110 108 CCDS HistoryNCBI Gene:1129Re-query CCDS DB by CCDS ID:5843.1Re-query CCDS DB by GeneID:1129See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5843.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320658.9 ENSP00000319984.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320658.9Link to Ensembl Protein Viewer:ENSP00000319984.5Re-query CCDS DB by Nucleotide ID:ENST00000320658Re-query CCDS DB by Protein ID:ENSP00000319984
Original member Current member EBI ENST00000401861.1 ENSP00000384401.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401861.1Link to Ensembl Protein Viewer:ENSP00000384401.1Re-query CCDS DB by Nucleotide ID:ENST00000401861Re-query CCDS DB by Protein ID:ENSP00000384401
Original member Current member EBI ENST00000445907.6 ENSP00000399745.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445907.6Link to Ensembl Protein Viewer:ENSP00000399745.2Re-query CCDS DB by Nucleotide ID:ENST00000445907Re-query CCDS DB by Protein ID:ENSP00000399745
Original member Current member EBI ENST00000453373.5 ENSP00000415386.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000453373.5Link to Ensembl Protein Viewer:ENSP00000415386.1Re-query CCDS DB by Nucleotide ID:ENST00000453373Re-query CCDS DB by Protein ID:ENSP00000415386
Original member Current member EBI ENST00000680005.1 ENSP00000505686.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000680005.1Link to Ensembl Protein Viewer:ENSP00000505686.1Re-query CCDS DB by Nucleotide ID:ENST00000680005Re-query CCDS DB by Protein ID:ENSP00000505686
Original member Current member NCBI NM_000739.3 NP_000730.1 Accepted alive Link to Nucleotide Sequence:NM_000739.3Link to Protein Sequence:NP_000730.1Re-query CCDS DB by Nucleotide ID:NM_000739Re-query CCDS DB by Protein ID:NP_000730Link to BLAST:NP_000730.1
Original member Current member NCBI NM_001006626.3 NP_001006627.1 Accepted alive Link to Nucleotide Sequence:NM_001006626.3Link to Protein Sequence:NP_001006627.1Re-query CCDS DB by Nucleotide ID:NM_001006626Re-query CCDS DB by Protein ID:NP_001006627Link to BLAST:NP_001006627.1
Original member Current member NCBI NM_001006627.3 NP_001006628.1 Accepted alive Link to Nucleotide Sequence:NM_001006627.3Link to Protein Sequence:NP_001006628.1Re-query CCDS DB by Nucleotide ID:NM_001006627Re-query CCDS DB by Protein ID:NP_001006628Link to BLAST:NP_001006628.1
Original member Current member NCBI NM_001006628.3 NP_001006629.1 Accepted alive Link to Nucleotide Sequence:NM_001006628.3Link to Protein Sequence:NP_001006629.1Re-query CCDS DB by Nucleotide ID:NM_001006628Re-query CCDS DB by Protein ID:NP_001006629Link to BLAST:NP_001006629.1
Original member Current member NCBI NM_001006629.3 NP_001006630.1 Accepted alive Link to Nucleotide Sequence:NM_001006629.3Link to Protein Sequence:NP_001006630.1Re-query CCDS DB by Nucleotide ID:NM_001006629Re-query CCDS DB by Protein ID:NP_001006630Link to BLAST:NP_001006630.1
Original member Current member NCBI NM_001006630.2 NP_001006631.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001006630.2Link to Protein Sequence:NP_001006631.1Re-query CCDS DB by Nucleotide ID:NM_001006630Re-query CCDS DB by Protein ID:NP_001006631Link to BLAST:NP_001006631.1
Original member Current member NCBI NM_001006631.3 NP_001006632.1 Accepted alive Link to Nucleotide Sequence:NM_001006631.3Link to Protein Sequence:NP_001006632.1Re-query CCDS DB by Nucleotide ID:NM_001006631Re-query CCDS DB by Protein ID:NP_001006632Link to BLAST:NP_001006632.1
Original member Current member NCBI NM_001006632.3 NP_001006633.1 Accepted alive Link to Nucleotide Sequence:NM_001006632.3Link to Protein Sequence:NP_001006633.1Re-query CCDS DB by Nucleotide ID:NM_001006632Re-query CCDS DB by Protein ID:NP_001006633Link to BLAST:NP_001006633.1
Original member Current member NCBI NM_001378972.1 NP_001365901.1 Accepted alive Link to Nucleotide Sequence:NM_001378972.1Link to Protein Sequence:NP_001365901.1Re-query CCDS DB by Nucleotide ID:NM_001378972Re-query CCDS DB by Protein ID:NP_001365901Link to BLAST:NP_001365901.1
Original member Current member NCBI NM_001378973.1 NP_001365902.1 Accepted alive Link to Nucleotide Sequence:NM_001378973.1Link to Protein Sequence:NP_001365902.1Re-query CCDS DB by Nucleotide ID:NM_001378973Re-query CCDS DB by Protein ID:NP_001365902Link to BLAST:NP_001365902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000730.1 466 P08172 466 100% 0 0
NP_001006627.1 466 P08172 466 100% 0 0
NP_001006628.1 466 P08172 466 100% 0 0
NP_001006629.1 466 P08172 466 100% 0 0
NP_001006630.1 466 P08172 466 100% 0 0
NP_001006631.1 466 P08172 466 100% 0 0
NP_001006632.1 466 P08172 466 100% 0 0
NP_001006633.1 466 P08172 466 100% 0 0
NP_001365901.1 466 P08172 466 100% 0 0
NP_001365902.1 466 P08172 466 100% 0 0

Chromosomal Locations for CCDS 5843.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 137014866 137016266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGAATAACTCAACAAACTCCTCTAACAATAGCCTGGCTCTTACAAGTCCTTATAAGACATTTGAAGTGG
TGTTTATTGTCCTGGTGGCTGGATCCCTCAGTTTGGTGACCATTATCGGGAACATCCTAGTCATGGTTTC
CATTAAAGTCAACCGCCACCTCCAGACCGTCAACAATTACTTTTTATTCAGCTTGGCCTGTGCTGACCTT
ATCATAGGTGTTTTCTCCATGAACTTGTACACCCTCTACACTGTGATTGGTTACTGGCCTTTGGGACCTG
TGGTGTGTGACCTTTGGCTAGCCCTGGACTATGTGGTCAGCAATGCCTCAGTTATGAATCTGCTCATCAT
CAGCTTTGACAGGTACTTCTGTGTCACAAAACCTCTGACCTACCCAGTCAAGCGGACCACAAAAATGGCA
GGTATGATGATTGCAGCTGCCTGGGTCCTCTCTTTCATCCTCTGGGCTCCAGCCATTCTCTTCTGGCAGT
TCATTGTAGGGGTGAGAACTGTGGAGGATGGGGAGTGCTACATTCAGTTTTTTTCCAATGCTGCTGTCAC
CTTTGGTACGGCTATTGCAGCCTTCTATTTGCCAGTGATCATCATGACTGTGCTATATTGGCACATATCC
CGAGCCAGCAAGAGCAGGATAAAGAAGGACAAGAAGGAGCCTGTTGCCAACCAAGACCCCGTTTCTCCAA
GTCTGGTACAAGGAAGGATAGTGAAGCCAAACAATAACAACATGCCCAGCAGTGACGATGGCCTGGAGCA
CAACAAAATCCAGAATGGCAAAGCCCCCAGGGATCCTGTGACTGAAAACTGTGTTCAGGGAGAGGAGAAG
GAGAGCTCCAATGACTCCACCTCAGTCAGTGCTGTTGCCTCTAATATGAGAGATGATGAAATAACCCAGG
ATGAAAACACAGTTTCCACTTCCCTGGGCCATTCCAAAGATGAGAACTCTAAGCAAACATGCATCAGAAT
TGGCACCAAGACCCCAAAAAGTGACTCATGTACCCCAACTAATACCACCGTGGAGGTAGTGGGGTCTTCA
GGTCAGAATGGAGATGAAAAGCAGAATATTGTAGCCCGCAAGATTGTGAAGATGACTAAGCAGCCTGCAA
AAAAGAAGCCTCCTCCTTCCCGGGAAAAGAAAGTCACCAGGACAATCTTGGCTATTCTGTTGGCTTTCAT
CATCACTTGGGCCCCATACAATGTCATGGTGCTCATTAACACCTTTTGTGCACCTTGCATCCCCAACACT
GTGTGGACAATTGGTTACTGGCTTTGTTACATCAACAGCACTATCAACCCTGCCTGCTATGCACTTTGCA
ATGCCACCTTCAAGAAGACCTTTAAACACCTTCTCATGTGTCATTATAAGAACATAGGCGCTACAAGGTA
A

Translation (466 aa):
MNNSTNSSNNSLALTSPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADL
IIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMA
GMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHIS
RASKSRIKKDKKEPVANQDPVSPSLVQGRIVKPNNNNMPSSDDGLEHNKIQNGKAPRDPVTENCVQGEEK
ESSNDSTSVSAVASNMRDDEITQDENTVSTSLGHSKDENSKQTCIRIGTKTPKSDSCTPTNTTVEVVGSS
GQNGDEKQNIVARKIVKMTKQPAKKKPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNT
VWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHYKNIGATR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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