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Report for CCDS44992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44992.1 Public Homo sapiens 12 VSIG10 24 110 108 CCDS HistoryNCBI Gene:54621Re-query CCDS DB by CCDS ID:44992.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44992.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359236.10 ENSP00000352172.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359236.10Link to Ensembl Protein Viewer:ENSP00000352172.5Re-query CCDS DB by Nucleotide ID:ENST00000359236Re-query CCDS DB by Protein ID:ENSP00000352172
Original member Current member NCBI NM_019086.6 NP_061959.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019086.6Link to Protein Sequence:NP_061959.2Re-query CCDS DB by Nucleotide ID:NM_019086Re-query CCDS DB by Protein ID:NP_061959Link to BLAST:NP_061959.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061959.2 540 Q8N0Z9-1 540 100% 0 0

Chromosomal Locations for CCDS 44992.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 118066639 118066694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118068377 118068597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118071052 118071067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118071359 118071469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118073699 118073992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118079346 118079606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118082127 118082429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118095533 118095814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 118103593 118103671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGGCCGCAGGCGGCAGTGCGCCCGAGCCCCGCGTCCTCGTCTGCCTCGGGGCGCTCCTGGCCGGCTGGG
TCGCCGTAGGATTGGAGGCTGTTGTCATTGGAGAAGTTCATGAGAATGTTACTCTGCACTGTGGCAACAT
CTCGGGACTGAGGGGCCAGGTGACCTGGTACCGGAACAACTCGGAGCCTGTCTTCCTTCTCTCGTCCAAC
TCTAGCCTCCGGCCAGCTGAGCCTCGCTTCTCTCTAGTGGATGCCACCTCCCTGCACATTGAATCGCTGA
GCCTGGGAGATGAGGGAATCTACACCTGCCAGGAGATCCTGAATGTGACTCAGTGGTTCCAAGTGTGGCT
GCAGGTGGCCAGCGGCCCCTATCAGATTGAGGTCCACATCGTGGCCACCGGCACACTCCCCAACGGCACC
CTCTACGCAGCCAGGGGCTCCCAGGTGGACTTCAGCTGCAACAGCAGCTCCAGGCCACCACCCGTGGTTG
AATGGTGGTTCCAGGCCCTGAATTCCAGCAGCGAGTCCTTTGGCCACAACCTGACAGTCAACTTTTTCTC
ACTGTTACTGATATCGCCAAACCTCCAAGGGAACTACACCTGTTTAGCCTTGAATCAGCTCAGCAAGAGA
CATCGAAAGGTGACCACCGAGCTCCTGGTCTACTATCCCCCTCCATCAGCTCCCCAGTGCTGGGCACAGA
TGGCATCAGGATCGTTCATGTTGCAGCTTACCTGTCGCTGGGATGGGGGATACCCTGACCCTGACTTCCT
GTGGATAGAAGAGCCAGGAGGTGTAATCGTGGGGAAGTCAAAGCTGGGGGTGGAAATGCTGAGCGAGTCC
CAGCTGTCGGATGGCAAGAAGTTCAAGTGTGTTACAAGCCACATAGTTGGGCCAGAGTCGGGCGCCAGCT
GCATGGTGCAGATCAGGGGTCCCTCCCTTCTCTCTGAGCCCATGAAGACTTGCTTCACTGGGGGCAATGT
GACGCTTACATGCCAGGTGTCTGGGGCCTACCCCCCTGCCAAGATCCTGTGGCTGAGGAACCTTACCCAG
CCCGAGGTGATCATCCAGCCTAGCAGCCGCCATCTCATTACCCAGGATGGCCAGAACTCCACCCTCACTA
TCCACAACTGCTCCCAGGACCTGGATGAGGGCTACTACATCTGCCGAGCTGACAGCCCTGTAGGGGTGAG
GGAGATGGAAATCTGGCTGAGTGTGAAAGAACCTTTAAATATCGGGGGGATTGTGGGAACCATTGTGAGC
CTCCTTCTGCTGGGACTGGCCATTATCTCAGGGCTTCTGTTGCATTATAGCCCTGTGTTCTGCTGGAAAG
TAGGAAACACTTCCAGGGGACAAAACATGGATGATGTCATGGTTTTGGTGGATTCAGAAGAGGAAGAGGA
GGAGGAGGAGGAGGAGGAGGAAGATGCTGCAGTAGGGGAACAGGAGGGAGCACGTGAGAGAGAGGAGTTG
CCAAAAGAAATACCTAAGCAGGACCACATTCACAGAGTGACCGCCTTGGTGAATGGGAACATAGAACAGA
TGGGAAATGGATTCCAGGATCTTCAAGATGACAGCAGTGAGGAGCAAAGTGACATTGTTCAAGAAGAAGA
CAGGCCAGTCTGA

Translation (540 aa):
MAAGGSAPEPRVLVCLGALLAGWVAVGLEAVVIGEVHENVTLHCGNISGLRGQVTWYRNNSEPVFLLSSN
SSLRPAEPRFSLVDATSLHIESLSLGDEGIYTCQEILNVTQWFQVWLQVASGPYQIEVHIVATGTLPNGT
LYAARGSQVDFSCNSSSRPPPVVEWWFQALNSSSESFGHNLTVNFFSLLLISPNLQGNYTCLALNQLSKR
HRKVTTELLVYYPPPSAPQCWAQMASGSFMLQLTCRWDGGYPDPDFLWIEEPGGVIVGKSKLGVEMLSES
QLSDGKKFKCVTSHIVGPESGASCMVQIRGPSLLSEPMKTCFTGGNVTLTCQVSGAYPPAKILWLRNLTQ
PEVIIQPSSRHLITQDGQNSTLTIHNCSQDLDEGYYICRADSPVGVREMEIWLSVKEPLNIGGIVGTIVS
LLLLGLAIISGLLLHYSPVFCWKVGNTSRGQNMDDVMVLVDSEEEEEEEEEEEEDAAVGEQEGAREREEL
PKEIPKQDHIHRVTALVNGNIEQMGNGFQDLQDDSSEEQSDIVQEEDRPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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