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Report for CCDS33591.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33591.1 Public Homo sapiens 21 YBEY 24 110 108 CCDS HistoryNCBI Gene:54059Re-query CCDS DB by CCDS ID:33591.1Re-query CCDS DB by GeneID:54059See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33591.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329319.7 ENSP00000329614.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000329319.7Link to Ensembl Protein Viewer:ENSP00000329614.3Re-query CCDS DB by Nucleotide ID:ENST00000329319Re-query CCDS DB by Protein ID:ENSP00000329614
Original member Current member EBI ENST00000397691.1 ENSP00000380805.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397691.1Link to Ensembl Protein Viewer:ENSP00000380805.1Re-query CCDS DB by Nucleotide ID:ENST00000397691Re-query CCDS DB by Protein ID:ENSP00000380805
Original member Current member EBI ENST00000397701.9 ENSP00000380813.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397701.9Link to Ensembl Protein Viewer:ENSP00000380813.4Re-query CCDS DB by Nucleotide ID:ENST00000397701Re-query CCDS DB by Protein ID:ENSP00000380813
Original member Current member NCBI NM_001314025.2 NP_001300954.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001314025.2Link to Protein Sequence:NP_001300954.1Re-query CCDS DB by Nucleotide ID:NM_001314025Re-query CCDS DB by Protein ID:NP_001300954Link to BLAST:NP_001300954.1
Original member Current member NCBI NM_058181.3 NP_478061.1 Accepted alive Link to Nucleotide Sequence:NM_058181.3Link to Protein Sequence:NP_478061.1Re-query CCDS DB by Nucleotide ID:NM_058181Re-query CCDS DB by Protein ID:NP_478061Link to BLAST:NP_478061.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300954.1 167 P58557-1 167 100% 0 0
NP_478061.1 167 P58557-1 167 100% 0 0

Chromosomal Locations for CCDS 33591.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 46286914 46287123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 46291334 46291462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 46296162 46296230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 46297539 46297634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGAGTTTGGTGATTAGAAATCTGCAGCGAGTCATCCCCATCAGGAGAGCGCCACTTCGCAGTAAGATCG
AGATTGTAAGGAGGATTTTAGGAGTGCAGAAATTTGACCTGGGGATCATCTGTGTTGACAACAAGAATAT
TCAGCACATTAATAGAATCTACAGAGATAGAAATGTCCCAACCGATGTGCTTTCTTTTCCATTTCATGAG
CATCTGAAAGCAGGTGAATTTCCCCAGCCTGATTTTCCAGATGACTACAATTTGGGAGACATTTTCCTAG
GAGTGGAGTATATCTTCCATCAGTGTAAAGAAAATGAAGATTACAATGACGTCCTGACTGTGACGGCCAC
CCACGGACTCTGTCACTTGCTGGGATTCACACACGGCACGGAGGCAGAGTGGCAGCAGATGTTCCAGAAG
GAGAAGGCGGTGCTGGACGAGCTGGGCCGACGCACGGGGACCCGGCTGCAGCCCCTGACCCGGGGCCTCT
TCGGAGGGAGCTGA

Translation (167 aa):
MSLVIRNLQRVIPIRRAPLRSKIEIVRRILGVQKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHE
HLKAGEFPQPDFPDDYNLGDIFLGVEYIFHQCKENEDYNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQK
EKAVLDELGRRTGTRLQPLTRGLFGGS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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