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Report for CCDS29389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29389.1 Public Mus musculus 18 Socs6 23 108 98 CCDS HistoryNCBI Gene:54607Re-query CCDS DB by CCDS ID:29389.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070116.11 ENSMUSP00000064929.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070116.11Link to Ensembl Protein Viewer:ENSMUSP00000064929.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000070116Re-query CCDS DB by Protein ID:ENSMUSP00000064929
Original member Current member EBI ENSMUST00000123826.1 ENSMUSP00000114993.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123826.1Link to Ensembl Protein Viewer:ENSMUSP00000114993.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123826Re-query CCDS DB by Protein ID:ENSMUSP00000114993
Original member Current member EBI ENSMUST00000125362.7 ENSMUSP00000118764.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125362.7Link to Ensembl Protein Viewer:ENSMUSP00000118764.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125362Re-query CCDS DB by Protein ID:ENSMUSP00000118764
Original member Current member NCBI NM_018821.5 NP_061291.2 Accepted alive Link to Nucleotide Sequence:NM_018821.5Link to Protein Sequence:NP_061291.2Re-query CCDS DB by Nucleotide ID:NM_018821Re-query CCDS DB by Protein ID:NP_061291Link to BLAST:NP_061291.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061291.2 533 Q9JLY0 533 100% 0 0

Chromosomal Locations for CCDS 29389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 88869188 88870789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGAAGAAAATCAGTCTGAAGACCTTCAGGAAATCTTTTAACCTGAGTAAAAGCAAAGACGAAACTGAGT
TCATGGTGGTTCAGCCCCAGTCCCTTGCTGGTGACTTCGTGAAAGATGACTCTTTATTCGGGAGCTGTTA
TGGCAAAGACATGGCCAGTTGTGACATTGGCAGCGAGGATGAGAAAGGGAAGAACAGATCCAAAAGCGAG
AGCCTGATGGGCACTTTGAAGAGGCGGTTGTCCGCCAAGCAGAAGACCAAGGGCAAGGGCGGCACTGCGT
CTACAGATGAGGACACCTTCTCCTCAGCTTCAGCTCCTGGTGGGCTCAAGGATGTGCGTGCTCCGCGGCC
CATCCGCTCCACATCACTGAGAAGCCACCATTATAGCCCCACGCCCTGGCCGCTGCGTCCCACCAGCTCG
GAGGAGACGTGCATCAAGATGGAGATGCGAGTGAAAGCACTGGTGCATGCTGCCAGCCCAGGACCAGTCA
ACGGTGTGCGCAAGGATCTGCGGGAGCTACAGCCCAGGGAGCTGCGAGACCTGCAGCCAGAGCCGCGCCC
TGAGTCCCGCTGCAGCCCCAGCTCACCCGGGGACCTGAGCCTCCACCTGGAGGAACACGTGCCTGTAGTA
ATCGGACTCATGTCTCAGGACTACCTTCAGTACACCGTGCCTTTAGATGACGGGATGTGCCCTCTTGAAG
GGCCGCGCAGCTGCTGCCTGGATACGTCTTCTCCCATGGAGGTGTCAGCCGTACCCCTGCCGGGGGCGAG
TGGTGCCTTCTCCGAAGACGACAGTCATGTGGACCAGGACCTGGTTGTAGGCCCAGAGATCCTTGTGGAT
TCATCAGTGAACAATTTGTTGATTGGCACCACAGGAGTCATGTTGCAGAGCCCTAGAGGAGGTCATGATG
ACGCCCCTCCCCTCTCACCATTGCTACCTCCAATGCAGAATAACCCAATCCAAAGGAACTTCAGTGGCCT
CTCGGGCCCAGACTTGCACATGGCCGAAAGTGTTCGCTGTCATTTGAATTTCGATCCCAACTCTGCGCCT
GGGGTTGCTAGAGTTTATGACTCGGTGCAAAGTAGTGGCCCCATGGTTGTTACAAGTCTTACGGAGGAGC
TGAAGAAGCTTGCAAAACAGGGGTGGTATTGGGGCCCCATCACACGCTGGGAGGCAGAGGGGAAGTTGGC
AAATGTGCCAGATGGTTCTTTTCTTGTAAGGGATAGTTCTGATGACCGTTACCTTTTAAGCCTGAGCTTT
CGTTCCCATGGTAAAACACTTCACACTAGAATTGAGCACTCAAATGGTAGATTCAGCTTTTATGAACAGC
CAGATGTGGAAGGGCATACATCTATAGTTGACTTAATCGAGCATTCAATCAGGGACTCTGAAAATGGAGC
ATTTTGTTATTCAAGATCTCGATTGCCTGGATCAGCAACTTACCCAGTCAGACTGACCAATCCAGTGTCA
CGATTCATGCAGGTGCGCTCGCTGCAGTACCTGTGCCGCTTTGTTATCCGTCAGTACACCAGAATAGACT
TAATTCAGAAACTGCCTTTGCCAAACAAAATGAAGGATTATTTGCAGGAGAAGCACTACTGA

Translation (533 aa):
MKKISLKTFRKSFNLSKSKDETEFMVVQPQSLAGDFVKDDSLFGSCYGKDMASCDIGSEDEKGKNRSKSE
SLMGTLKRRLSAKQKTKGKGGTASTDEDTFSSASAPGGLKDVRAPRPIRSTSLRSHHYSPTPWPLRPTSS
EETCIKMEMRVKALVHAASPGPVNGVRKDLRELQPRELRDLQPEPRPESRCSPSSPGDLSLHLEEHVPVV
IGLMSQDYLQYTVPLDDGMCPLEGPRSCCLDTSSPMEVSAVPLPGASGAFSEDDSHVDQDLVVGPEILVD
SSVNNLLIGTTGVMLQSPRGGHDDAPPLSPLLPPMQNNPIQRNFSGLSGPDLHMAESVRCHLNFDPNSAP
GVARVYDSVQSSGPMVVTSLTEELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDRYLLSLSF
RSHGKTLHTRIEHSNGRFSFYEQPDVEGHTSIVDLIEHSIRDSENGAFCYSRSRLPGSATYPVRLTNPVS
RFMQVRSLQYLCRFVIRQYTRIDLIQKLPLPNKMKDYLQEKHY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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