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Report for CCDS4281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4281.1 Public Homo sapiens 5 POU4F3 24 110 108 CCDS HistoryNCBI Gene:5459Re-query CCDS DB by CCDS ID:4281.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4281.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000646991.2 ENSP00000495718.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000646991.2Link to Ensembl Protein Viewer:ENSP00000495718.1Re-query CCDS DB by Nucleotide ID:ENST00000646991Re-query CCDS DB by Protein ID:ENSP00000495718
Original member Current member NCBI NM_002700.3 NP_002691.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002700.3Link to Protein Sequence:NP_002691.1Re-query CCDS DB by Nucleotide ID:NM_002700Re-query CCDS DB by Protein ID:NP_002691Link to BLAST:NP_002691.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002691.1 338 Q15319 338 100% 0 0

Chromosomal Locations for CCDS 4281.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 146339113 146339232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 146339548 146340444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGATGGCCATGAACTCCAAGCAGCCTTTCGGCATGCACCCGGTGCTGCAAGAACCCAAATTCTCCAGTC
TGCACTCTGGCTCCGAGGCCATGCGCCGAGTCTGTCTCCCAGCCCCGCAGCTGCAGGGTAATATATTTGG
AAGCTTTGATGAGAGCCTGCTGGCACGCGCCGAAGCTCTGGCGGCGGTGGATATCGTCTCCCACGGCAAG
AACCATCCGTTCAAGCCCGACGCCACCTACCATACCATGAGCAGCGTGCCCTGCACGTCCACTTCGTCCA
CCGTGCCCATCTCCCACCCAGCTGCGCTCACCTCACACCCTCACCACGCCGTGCACCAGGGCCTCGAAGG
CGACCTGCTGGAGCACATCTCGCCCACGCTGAGTGTGAGCGGCCTGGGCGCTCCGGAACACTCGGTGATG
CCCGCACAGATCCATCCACACCACCTGGGCGCCATGGGCCACCTGCACCAGGCCATGGGCATGAGTCACC
CGCACACCGTGGCCCCTCATAGCGCCATGCCTGCATGCCTCAGCGACGTGGAGTCAGACCCGCGCGAGCT
GGAAGCCTTCGCCGAGCGCTTCAAGCAGCGGCGCATCAAGCTGGGGGTGACCCAGGCGGACGTGGGCGCG
GCTCTGGCTAATCTCAAGATCCCCGGCGTGGGCTCGCTGAGCCAAAGCACCATCTGCAGGTTCGAGTCTC
TCACTCTCTCGCACAACAACATGATCGCTCTCAAGCCGGTGCTCCAGGCCTGGTTGGAGGAGGCCGAGGC
CGCCTACCGAGAGAAGAACAGCAAGCCAGAGCTCTTCAACGGCAGCGAACGGAAGCGCAAACGCACGTCC
ATCGCGGCGCCGGAGAAGCGTTCACTCGAGGCCTATTTCGCTATCCAGCCACGTCCTTCATCTGAGAAGA
TCGCGGCCATCGCTGAGAAACTGGACCTTAAAAAGAACGTGGTGAGAGTCTGGTTCTGCAACCAGAGACA
GAAACAGAAACGAATGAAGTATTCGGCTGTCCACTGA

Translation (338 aa):
MMAMNSKQPFGMHPVLQEPKFSSLHSGSEAMRRVCLPAPQLQGNIFGSFDESLLARAEALAAVDIVSHGK
NHPFKPDATYHTMSSVPCTSTSSTVPISHPAALTSHPHHAVHQGLEGDLLEHISPTLSVSGLGAPEHSVM
PAQIHPHHLGAMGHLHQAMGMSHPHTVAPHSAMPACLSDVESDPRELEAFAERFKQRRIKLGVTQADVGA
ALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTS
IAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKYSAVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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