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Report for CCDS60581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60581.1 Public Homo sapiens 10 LRIT2 24 110 108 CCDS HistoryNCBI Gene:340745Re-query CCDS DB by CCDS ID:60581.1Re-query CCDS DB by GeneID:340745See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60581.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538192.5 ENSP00000438264.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538192.5Link to Ensembl Protein Viewer:ENSP00000438264.1Re-query CCDS DB by Nucleotide ID:ENST00000538192Re-query CCDS DB by Protein ID:ENSP00000438264
Original member Current member NCBI NM_001284223.1 NP_001271152.1 Accepted alive Link to Nucleotide Sequence:NM_001284223.1Link to Protein Sequence:NP_001271152.1Re-query CCDS DB by Nucleotide ID:NM_001284223Re-query CCDS DB by Protein ID:NP_001271152Link to BLAST:NP_001271152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271152.1 560 A6NDA9-2 560 100% 0 0

Chromosomal Locations for CCDS 60581.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 84221920 84222680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84222828 84222857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84224333 84225114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84225411 84225520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGCTTCAGTTTTTCATTACTTCCTGTTAGTTCTGGTCTTTCTGGATACACACGCAGCTCAGCCTTTCT
GTCTGCCAGGATGCACTTGCTCAGAGGAGAGTTTTGGCAGGACTCTGCAGTGCACATCTGTCTCCTTGGG
AAAGATCCCTGGGAACCTTTCTGAAGAGTTCAAGCAAGTGAGAATTGAAAATTCACCCTTATTTGAGATG
CCCCAAGGGTCTTTCATCAACATGAGCACCTTGGAATACCTCTGGCTCAATTTTAACAATATCAGTGTGA
TCCACCTAGGAGCCCTGGAACACCTGCCAGAACTGAGGGAGCTGAGACTGGAGGGGAACAAGCTCTGCTC
AGTACCATGGACAGCGTTCCGTGCCACCCCTCTCCTGAGGGTCTTGGATCTCAAACGCAACAAGATTGAT
GCACTCCCTGAGCTGGCTCTTCAATTCTTGGTCAGCCTGACCTACCTTGACCTATCCTCCAATAGGCTTA
CAGTTGTATCCAAGAGTGTCTTCCTGAACTGGCCAGCCTACCAGAAATGCCGGCAGCCTGACTGTGGGGC
TGAGATTCTCTCCAGCCTGGTGGTGGCCCTGCATGACAACCCCTGGGTATGTGACTGTCGCCTAAGGGGG
CTTGTCCAGTTTGTCAAGTCCATTACCCTCCCAGTCATCCTGGTGAATTCCTACCTGATATGTCAGGGCC
CTCTGTCCAAGGCAGGGCAGCTTTTTCATGAAACTGAGCTTAGTGCTTGCATGAAGCCACAGATCTCAAC
CCCCAGTGCCAATATCACCATCCGGGCAGGACAGAATGTGACCCTGCGATGCTTGGCACAGGCCAGCCCC
TCACCATCCATTGCATGGACTTATCCCCTGAGTATGTGGAGAGAATTTGATGGATTGCTGGGAGGCAAAC
ACCTGACACCAGTGTTGACATCTTCTACTGGAGAAGACACTGCTCTGTCAGAGCTGGCCATACCTGCTGC
CCACCTGGTAGACAGTGGTAATTACACCTGCATGGCCTCCAACTCCATTGGCAAGAGCAACCTTGTAATC
TCTCTCCATGTCCAGCCTGCCCAGGCCCTACATGCACCTGATTCTCTTTCCATCCCCTCGGAGGGCAATG
CCTACATTGACCTGCGGGTTGTCAAGCAGACAGTGCATGGGATTTTGCTGGAGTGGCTTGCAGTGGCTGA
CACCTCTAAGGAGGAGTGGTTCACCCTCTACATTGCATCGGATGAAGCCTTCAGGAAGGAGGTGGTTCAC
ATTGGCCCCGGAATCAATACTTATGCTGTGGATGACCTCCTTCCTGGCACAAAATATGAGGCCTGCCTCA
GCCTAGAGGGCCAGCCTCCACACCAGGGCCAGTGTGTAGCTTTTGTAACAGGCAGAGATGCTGGTGGGCT
AGAGGCACGTGAGCACCTCCTGCATGTCACAGTGGTCCTGTGTGTGGTGCTGCTTGCAGTGCCTGTGGGC
GCCTATGCCTGGGCAGCCCAGGGCCCCTGCAGCTGCAGCAAGTGGGTCCTGCGCGGCTGTCTTCATCGCA
GGAAAGCCCCCAGCTGCACCCCTGCAGCCCCGCAGTCCAAGGATGGCTCCTTTAGAGAACATCCAGCTGT
CTGTGATGACGGTGAAGGGCACATAGACACTGAGGGGGACAAGGAGAAAGGAGGAACGGAAGACAACAGC
TGA

Translation (560 aa):
MASVFHYFLLVLVFLDTHAAQPFCLPGCTCSEESFGRTLQCTSVSLGKIPGNLSEEFKQVRIENSPLFEM
PQGSFINMSTLEYLWLNFNNISVIHLGALEHLPELRELRLEGNKLCSVPWTAFRATPLLRVLDLKRNKID
ALPELALQFLVSLTYLDLSSNRLTVVSKSVFLNWPAYQKCRQPDCGAEILSSLVVALHDNPWVCDCRLRG
LVQFVKSITLPVILVNSYLICQGPLSKAGQLFHETELSACMKPQISTPSANITIRAGQNVTLRCLAQASP
SPSIAWTYPLSMWREFDGLLGGKHLTPVLTSSTGEDTALSELAIPAAHLVDSGNYTCMASNSIGKSNLVI
SLHVQPAQALHAPDSLSIPSEGNAYIDLRVVKQTVHGILLEWLAVADTSKEEWFTLYIASDEAFRKEVVH
IGPGINTYAVDDLLPGTKYEACLSLEGQPPHQGQCVAFVTGRDAGGLEAREHLLHVTVVLCVVLLAVPVG
AYAWAAQGPCSCSKWVLRGCLHRRKAPSCTPAAPQSKDGSFREHPAVCDDGEGHIDTEGDKEKGGTEDNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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