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Report for CCDS49836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49836.1 Public Mus musculus 16 Kalrn 23 108 98 CCDS HistoryNCBI Gene:545156Re-query CCDS DB by CCDS ID:49836.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49836.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114960.8 ENSMUSP00000110611.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114960.8Link to Ensembl Protein Viewer:ENSMUSP00000110611.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114960Re-query CCDS DB by Protein ID:ENSMUSP00000110611
Original member Current member NCBI NM_001164268.1 NP_001157740.1 Accepted alive Link to Nucleotide Sequence:NM_001164268.1Link to Protein Sequence:NP_001157740.1Re-query CCDS DB by Nucleotide ID:NM_001164268Re-query CCDS DB by Protein ID:NP_001157740Link to BLAST:NP_001157740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157740.1 1654 A2CG49-9 1654 100% 0 0

Chromosomal Locations for CCDS 49836.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 34153443 34153505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34171272 34171374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34174385 34174527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34175729 34175830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34176267 34176457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34178296 34178407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34182658 34182750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34187415 34187504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34189668 34189737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34198393 34198502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34199185 34199251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34203861 34203979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34205148 34205330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34212158 34212280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34212791 34212906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34215015 34215129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34217796 34217945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34220056 34220247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34227027 34227146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34235245 34235411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34243771 34243966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34252225 34252399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34256152 34256360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34262628 34262819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34294118 34294240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34307609 34307839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34310436 34310567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34314169 34314360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34332124 34332246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34356885 34357397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34360817 34361009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34385285 34385399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34392035 34392109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 34513914 34513980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4965 nt):
ATGACGGACCGCTTCTGGGACCAGTGGTATCTTTGGTATCTCCGCTTGCTTCGGCTTCTGGATCGAGGAT
CTTTTCGGAATGATGGTTTGAAAGCTTCTGATGTCCTTCCTATCCTAAAGGAGAAAGTGGCCTTTGTGTC
TGGGGGGCGTGACAAGCGAGGTGGACCCATCCTGACCTTCCCTGCCCGAAGCAATCATGACAGAATAAGA
CAGGAAGACCTACGGAAACTTGTGACGTATTTGGCCAGCGTGCCAAGTGAGGACGTTTGCAAACGTGGCT
TCACCGTCATCATCGACATGCGGGGCTCCAAGTGGGATCTCATCAAGCCCCTCCTCAAGACGCTGCAGGA
AGCCTTCCCCGCCGAGATCCATGTGGCCCTCATCATCAAGCCTGACAACTTCTGGCAGAAGCAGAAGACC
AACTTTGGCAGCTCCAAATTCATCTTTGAGACAAGCATGGTGTCTGTGGAGGGCCTCACGAAGCTGGTGG
ACCCCTCCCAGCTGACAGAGGAGTTTGACGGCTCCCTGGATTACAACCATGAGGAGTGGATTGAGTTGCG
CCTCTCCCTGGAGGAGTTCTTCAACAGTGCGGTCCACCTGCTCTCACGCCTTGAGGACCTGCAGGAGATG
CTGGCCCGGAAGGAGTTCCCTGTGGATGTGGAGGGCTCTCGGAGGCTTATCGACGAGCACACGCAACTTA
AGAAAAAGGTGCTGAAGGCCCCCGTGGAAGAGCTGGACCGGGAGGGGCAGCGTCTACTGCAGTGCATCCG
CTGCAGCGATGGCTTCTCAGGGCGCAACTGCATCCCAGGAAGTGCCGACTTCCAGAGCCTTGTACCCAAG
ATCACCAGCCTCCTGGACAAGCTGCATTCCACCCGACAACACCTGCACCAAATGTGGCACGTGCGAAAGC
TCAAGCTGGATCAGTGCTTCCAGCTGCGGCTCTTCGAGCAGGATGCTGAGAAGATGTTCGACTGGATAAG
CCACAACAAGGAGTTATTTCTTCAGAGCCACACAGAGATCGGAGTCAGCTACCAGCATGCACTAGACCTC
CAGACACAGCACAATCACTTTGCCATGAACTCCATGAATGCCTATGTCAACATCAACCGCATCATGTCTG
TCGCTTCCCGCCTCTCAGAGGCCGGCCATTATGCCTCCCAGCAAATCAAGCAGATCTCCACGCAGCTAGA
CCAGGAGTGGAAGAGCTTTGCCGCTGCCCTGGATGAACGCAGTACAATCCTGGCCATGTCTGCTGTGTTC
CACCAGAAGGCAGAGCAGTTCCTGTCAGGCGTGGATGCCTGGTGTAAGATGTGCAGCGAAGGCGGCCTTC
CTTCTGAGATGCAGGACCTGGAGCTGGCAATCCACCATCACCAGTCCTTATATGAGCAGGTGACCCAGGC
CTACACAGAGGTCAGCCAGGATGGCAAAGCACTACTGGATGTCCTGCAGCGTCCCCTGAGTCCTGGGAAC
TCTGAGTCCCTCACAGCCACAGCCAACTACTCCAAGGCGGTCCACCAGGTGCTGGATGTGGTCCACGAGG
TGCTGCACCATCAGCGACGGCTCGAGAGCATCTGGCAGCACCGCAAGGTGCGGCTTCACCAGCGGCTGCA
GCTGTGTGTCTTCCAGCAGGATGTGCAGCAGGTGCTGGACTGGATTGAAAACCATGGCGAGGCCTTTCTC
AGCAAACACACTGGGGTTGGCAAGTCCTTGCATCGAGCACGTGCACTACAGAAGAGGCATGATGACTTTG
AAGAAGTGGCACAGAATACATACACCAATGCGGACAAGCTCCTAGAAGCAGCGGAGCAGCTGGCTCAGAC
TGGGGAATGTGACCCGGAGGAGATCTACAAGGCAGCCCGGCACCTGGAGGTGCGCATCCAAGACTTTGTG
CGCAGAGTGGAGCAGCGGAAGCTGCTTCTGGACATGTCGGTCTCTTTCCACACGCACACCAAAGAGCTGT
GGACATGGATGGAGGACCTTCAGAAGGAGGTGCTGGAGGATGTCTGTGCAGACTCTGTGGATGCGGTCCA
GGAGCTGATCAAGCAGTTCCAGCAGCAGCAGACCGCCACCCTGGATGCCACTCTCAATGTCATCAAGGAA
GGCGAAGACCTTATCCAGCAGCTCAGGTCAGCGCCTCCCTCCCTGGGGGAGCCCACCGAGGCCAGGGACT
CAGCGATGTCCAACAACAAGACACCCCACAGTAGCTCTATCAGCCATATTGAGTCTGTCCTCCAGCAGCT
GGACGATGCTCAGGTACAGATGGAAGAGCTGTTTCACGAGCGGAAGATCAAGCTGGACATCTTCCTACAG
CTGCGCATCTTTGAACAGTACACCATTGAGGTCACTGCAGAGCTGGATGCCTGGAACGAGGACTTGCTCC
GGCAGATGAATGATTTCAACACAGAGGATCTGACCCTGGCTGAGCAGCGGCTACAGCGCCACACAGAACG
GAAGCTTGCCATGAACAACATGACGTTCGAGGTCATCCAGCAGGGCCAGGACCTGCACCAGTACATCATG
GAAGTGCAAGCGTCAGGAATCGAGTTAATCTGTGAGAAGGACCTTGACCTGGCAGCTCAGGTGCAGGAGC
TGCTGGAGTTTCTCCATGAGAAGCAGCACGAGCTGGAGCTCAATGCGGAGCAGACGCACAAGCGGCTAGA
GCAGTGTCTCCAGCTGAGGCACCTCCAGGCTGAGGTCAAACAGGTTCTGGGATGGATCCGCAATGGAGAG
TCGATGCTCAACGCCAGCCTGGTCAACGCCAGCTCTTTGTCGGAGGCAGAGCAGCTGCAGCGGGAGCATG
AACAGTTCCAGCTAGCCATCGAGAAGACGCACCAGAGCGCCCTGCAGGTACAGCAGAAGGCAGAGGCACT
GCTCCAGGCCGGCCACTACGACGCAGACGCCATCCGGGAATGTGCTGAGAAGGTGGCCCTCCACTGGCAA
CAGCTCATGCTAAAGATGGAGGACCGGCTGAAGCTTGTCAACGCCTCTGTGGCCTTTTACAAGACCTCTG
AGCAGGTGTGCAGTGTTCTGGAGAGCTTGGAGCAGGAGTACCGGAGAGACGAGGACTGGTGTGGTGGGAG
AGACAAGCTGGGGCCGGCGGCAGAGATGGACCACGTTATTCCACTCCTCAGCAAGCACCTGGAGCAGAAG
GAGGCCTTCCTGAAGGCCTGCACGCTGGCAAGGCGGAACGCCGAGGTGTTCCTCAAATACATCCACAGGA
ACAATGTGAGCATGCCTAGTGTTGCCAGCCACACCCGGGGGCCTGAACAGCAAGTAAAAGCCATCTTGAG
CGAGCTCTTGCAGAGGGAGAATCGAGTCCTGCACTTCTGGACCTTGAAGAAGCGGCGGTTAGACCAGTGT
CAGCAATATGTGGTGTTTGAGCGCAGTGCTAAGCAGGCACTGGACTGGATCCAAGAAACAGGAGAATATT
ACCTCTCAACACATACCTCCACCGGAGAGACCACGGAGGAGACTCAGGAGCTGCTGAAAGAGTATGGAGA
ATTCAGGGTGCCTGCCAAGCAAACGAAGGAGAAGGTGAAACTTCTGATCCAGCTAGCAGACAGCTTTGTG
GAAAAGGGCCACATCCACGCCACAGAGATACGGAAATGGGTGACCACGGTGGACAAGCACTACCGCGATT
TCTCCCTGAGGATGGGGAAGTACCGGTACTCGCTGGAGAAGGCGCTGGGGGTCAACACGGAGGATAACAA
GGACCTAGAGCTGGACATCATCCCAGCAAGCCTTTCGGATCGGGAGGTCAAGCTCCGGGACGCTAACCAT
GAGATCAATGAAGAGAAACGGAAGTCAGCTCGAAAGAAAGAGTTCATTATGGCTGAACTGCTCCAAACTG
AGAAGGCTTATGTAAGGGACTTGCACGAGTGCTTGGAGACCTACCTGTGGGAGATGACTAGTGGTGTGGA
AGAGATACCCCCCGGCATCCTCAATAAGGAACATATCATCTTCGGCAACATCCAGGAGATCTATGACTTC
CATAACAACATCTTCCTCAAAGAGCTGGAGAAGTACGAGCAGCTGCCTGAGGATGTGGGACACTGCTTTG
TTACCTGGGCAGACAAATTTCAGATGTATGTCACCTACTGTAAAAACAAGCCTGATTCCAACCAGCTGAT
CCTGGAGCATGCGGGCACCTTCTTTGATGAGATCCAGCAGCGGCATGGCCTGGCCAACTCCATCTCCTCC
TACCTAATTAAGCCTGTCCAGAGGGTTACCAAGTACCAGCTGCTCCTGAAGGAACTTCTAACTTGCTGTG
AAGAAGGGAAAGGAGAGCTGAAGGATGGCCTGGAGGTGATGCTCAGTGTCCCCAAGAAAGCCAACGATGC
CATGCATGTCAGCATGCTGGAAGGGTTCGATGAAAACTTGGATGTACAGGGGGAGTTGATTCTCCAGGAT
GCCTTTCAAGTGTGGGACCCAAAGTCGCTGATCCGGAAGGGGCGGGAGCGCCATCTGTTCCTCTTTGAGA
TCTCCTTGGTGTTTAGCAAAGAGATCAAAGACTCTTCAGGACACACGAAATATGTTTACAAGAACAAGCT
ACTGACCTCAGAGCTGGGTGTGACCGAGCATGTAGAAGGTGACCCCTGCAAATTCGCCTTGTGGTCTGGG
CGCACCCCATCCTCAGACAATAAAACAGTGCTCAAAGCTTCCAACATCGAAACCAAGCAGGAATGGATCA
AGAACATTCGAGAAGTGATTCAGGAGAGGATCATTCATCTTAAAGGCGCTTTAAAGGAGCCAATTCAGCT
CCCCAAAACACCAGCCAAACTGAGGAACAATAGTAAGAGGGATGGGGTAGAGGATGGTGACAGCCAAGGG
GATGGGAGCAGCCAGCCAGATACCATATCCATTGCCTCCAGGACCTCTCAGAACACAGTGGAAAGTGACA
AGGATGGCAACCTTGTTCCTCGTTGGCACCTGGGACCTGGAGATCCTTTCTCCACTTACGTTTAG

Translation (1654 aa):
MTDRFWDQWYLWYLRLLRLLDRGSFRNDGLKASDVLPILKEKVAFVSGGRDKRGGPILTFPARSNHDRIR
QEDLRKLVTYLASVPSEDVCKRGFTVIIDMRGSKWDLIKPLLKTLQEAFPAEIHVALIIKPDNFWQKQKT
NFGSSKFIFETSMVSVEGLTKLVDPSQLTEEFDGSLDYNHEEWIELRLSLEEFFNSAVHLLSRLEDLQEM
LARKEFPVDVEGSRRLIDEHTQLKKKVLKAPVEELDREGQRLLQCIRCSDGFSGRNCIPGSADFQSLVPK
ITSLLDKLHSTRQHLHQMWHVRKLKLDQCFQLRLFEQDAEKMFDWISHNKELFLQSHTEIGVSYQHALDL
QTQHNHFAMNSMNAYVNINRIMSVASRLSEAGHYASQQIKQISTQLDQEWKSFAAALDERSTILAMSAVF
HQKAEQFLSGVDAWCKMCSEGGLPSEMQDLELAIHHHQSLYEQVTQAYTEVSQDGKALLDVLQRPLSPGN
SESLTATANYSKAVHQVLDVVHEVLHHQRRLESIWQHRKVRLHQRLQLCVFQQDVQQVLDWIENHGEAFL
SKHTGVGKSLHRARALQKRHDDFEEVAQNTYTNADKLLEAAEQLAQTGECDPEEIYKAARHLEVRIQDFV
RRVEQRKLLLDMSVSFHTHTKELWTWMEDLQKEVLEDVCADSVDAVQELIKQFQQQQTATLDATLNVIKE
GEDLIQQLRSAPPSLGEPTEARDSAMSNNKTPHSSSISHIESVLQQLDDAQVQMEELFHERKIKLDIFLQ
LRIFEQYTIEVTAELDAWNEDLLRQMNDFNTEDLTLAEQRLQRHTERKLAMNNMTFEVIQQGQDLHQYIM
EVQASGIELICEKDLDLAAQVQELLEFLHEKQHELELNAEQTHKRLEQCLQLRHLQAEVKQVLGWIRNGE
SMLNASLVNASSLSEAEQLQREHEQFQLAIEKTHQSALQVQQKAEALLQAGHYDADAIRECAEKVALHWQ
QLMLKMEDRLKLVNASVAFYKTSEQVCSVLESLEQEYRRDEDWCGGRDKLGPAAEMDHVIPLLSKHLEQK
EAFLKACTLARRNAEVFLKYIHRNNVSMPSVASHTRGPEQQVKAILSELLQRENRVLHFWTLKKRRLDQC
QQYVVFERSAKQALDWIQETGEYYLSTHTSTGETTEETQELLKEYGEFRVPAKQTKEKVKLLIQLADSFV
EKGHIHATEIRKWVTTVDKHYRDFSLRMGKYRYSLEKALGVNTEDNKDLELDIIPASLSDREVKLRDANH
EINEEKRKSARKKEFIMAELLQTEKAYVRDLHECLETYLWEMTSGVEEIPPGILNKEHIIFGNIQEIYDF
HNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSNQLILEHAGTFFDEIQQRHGLANSISS
YLIKPVQRVTKYQLLLKELLTCCEEGKGELKDGLEVMLSVPKKANDAMHVSMLEGFDENLDVQGELILQD
AFQVWDPKSLIRKGRERHLFLFEISLVFSKEIKDSSGHTKYVYKNKLLTSELGVTEHVEGDPCKFALWSG
RTPSSDNKTVLKASNIETKQEWIKNIREVIQERIIHLKGALKEPIQLPKTPAKLRNNSKRDGVEDGDSQG
DGSSQPDTISIASRTSQNTVESDKDGNLVPRWHLGPGDPFSTYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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