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Report for CCDS35312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35312.1 Public Homo sapiens X SPIN2A 24 110 108 CCDS HistoryNCBI Gene:54466Re-query CCDS DB by CCDS ID:35312.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35312.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374906.4 ENSP00000364041.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374906.4Link to Ensembl Protein Viewer:ENSP00000364041.3Re-query CCDS DB by Nucleotide ID:ENST00000374906Re-query CCDS DB by Protein ID:ENSP00000364041
Original member Current member EBI ENST00000374908.1 ENSP00000364043.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374908.1Link to Ensembl Protein Viewer:ENSP00000364043.1Re-query CCDS DB by Nucleotide ID:ENST00000374908Re-query CCDS DB by Protein ID:ENSP00000364043
Original member Current member NCBI NM_019003.5 NP_061876.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019003.5Link to Protein Sequence:NP_061876.3Re-query CCDS DB by Nucleotide ID:NM_019003Re-query CCDS DB by Protein ID:NP_061876Link to BLAST:NP_061876.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061876.3 258 Q99865 258 100% 0 0

Chromosomal Locations for CCDS 35312.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 57135821 57136597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGAAGACCCCCAACGCACAGGAAGCCGAAGGGCAACAAACCAGGGCAGCTGCAGGACGGGCCACTGGGT
CTGCAAACATGACAAAGAAAAAAGTCTCCCAAAAGAAGCAGAGAGGCCGACCTTCATCCCAGCCCCGCAG
GAACATCGTGGGCTGCAGAATTTCTCATGGATGGAAGGAAGGAGATGAGCCCATCACGCAGTGGAAAGGA
ACCGTTCTGGATCAGGTGCCTATAAATCCCTCTCTTTATCTGGTGAAATATGATGGAATTGACTGTGTCT
ATGGACTGGAACTTCACAGAGATGAAAGGGTTTTGTCTCTTAAAATTCTTTCTGACAGGGTGGCATCATC
TCACATTAGTGATGCCAACCTTGCAAATACCATAATTGGCAAAGCAGTGGAACACATGTTTGAGGGAGAG
CATGGTTCTAAGGATGAATGGAGGGGGATGGTCTTAGCTCAAGCACCTATCATGAAAGCCTGGTTTTATA
TTACCTATGAGAAAGATCCTGTCTTGTACATGTACCAGCTTCTAGATGATTATAAGGAAGGTGACCTCCG
CATCATGCCAGAATCCAGTGAGTCTCCTCCAACAGAGAGGGAGCCAGGAGGAGTTGTAGATGGCCTAATA
GGTAAGCATGTGGAATATACCAAAGAAGATGGCTCCAAAAGGATCGGCATGGTCATTCACCAAGTGGAAA
CCAAACCCTCTGTGTATTTCATCAAGTTTGATGATGATTTCCATATCTATGTCTACGATTTGGTGAAAAA
GTCCTAA

Translation (258 aa):
MKTPNAQEAEGQQTRAAAGRATGSANMTKKKVSQKKQRGRPSSQPRRNIVGCRISHGWKEGDEPITQWKG
TVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHISDANLANTIIGKAVEHMFEGE
HGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDDYKEGDLRIMPESSESPPTEREPGGVVDGLI
GKHVEYTKEDGSKRIGMVIHQVETKPSVYFIKFDDDFHIYVYDLVKKS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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