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Report for CCDS93129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93129.1 Public Homo sapiens 22 GGTLC2 24 110 108 CCDS HistoryNCBI Gene:91227Re-query CCDS DB by CCDS ID:93129.1Re-query CCDS DB by GeneID:91227See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 93129.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000417145.2 ENSP00000499086.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000417145.2Link to Ensembl Protein Viewer:ENSP00000499086.1Re-query CCDS DB by Nucleotide ID:ENST00000417145Re-query CCDS DB by Protein ID:ENSP00000499086
Original member Current member NCBI NM_001282879.2 NP_001269808.1 Accepted alive Link to Nucleotide Sequence:NM_001282879.2Link to Protein Sequence:NP_001269808.1Re-query CCDS DB by Nucleotide ID:NM_001282879Re-query CCDS DB by Protein ID:NP_001269808Link to BLAST:NP_001269808.1
Original member Current member NCBI NM_001391910.1 NP_001378839.1 Accepted alive Link to Nucleotide Sequence:NM_001391910.1Link to Protein Sequence:NP_001378839.1Re-query CCDS DB by Nucleotide ID:NM_001391910Re-query CCDS DB by Protein ID:NP_001378839Link to BLAST:NP_001378839.1
Original member Current member NCBI NM_001391911.1 NP_001378840.1 Accepted alive Link to Nucleotide Sequence:NM_001391911.1Link to Protein Sequence:NP_001378840.1Re-query CCDS DB by Nucleotide ID:NM_001391911Re-query CCDS DB by Protein ID:NP_001378840Link to BLAST:NP_001378840.1

Chromosomal Locations for CCDS 93129.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 22646346 22646521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 22646754 22646881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 22646983 22647290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 22647595 22647741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGACCTCTGAGTTCTTCGCTGCCCAGCTCCGGGCCCAGATCTCTGACGACACCACTCACCCGATCTCCT
ACTACAAGCCCGAGTTCTACACGCCGGTTGATGGGGGCACTGCTCACCTGTCTGTCGTCGCAGAGGACGG
CAGTGCTGTGTCCGCCACCAGCACCATCAACCTCTACTTTGGCTCCAAGGTCCGCTCCCCGGTCAGCGAG
ATCCTGTTCAATGATGAAATGGATGACTTCAGCTCTCCCAACATCACCAACGAGTTTGGGGTGCCCCCCT
CACCTGCCAATTTCATCCAGCCAGGGAAGCAGCCGCTCTCGTCAATGTGCCCGACGATCATGGTGGGCCA
GGACGGCCAGGTCCGGATGGTGGTGGGAGCTGCTGGGGGCACACAGATCACCACAGCCACTGCACTGATA
TGTGTCACCCCTTTTCTCCCTGGCCGTGCCCACCCTGCACAGCCCCCAAGCCATGCTGATCACACTCCCA
TGCCCCAGGCCATCATCTACAACCTCTGGTTCGGCTATGACGTGAAGCGGGCCGTGGAGGAGCCCCGGCT
GCACAACCAGCTTCTGCCCAACGTCACGACAGTGGAGAGAAACATTGACCAGGCAGTGACTGCAGCCCTG
GAGACCCGGCACCATCACACCCAGATCGCGTCCACCTTCATCGCTGTGGTGCAAGCCATCGTCCGCACGG
CTGGTGGCTGGGCAGCTGCCTCGGACTCCAGGAAAGGCGGGGAGCCTGCCGGCTACTGA

Translation (252 aa):
MTSEFFAAQLRAQISDDTTHPISYYKPEFYTPVDGGTAHLSVVAEDGSAVSATSTINLYFGSKVRSPVSE
ILFNDEMDDFSSPNITNEFGVPPSPANFIQPGKQPLSSMCPTIMVGQDGQVRMVVGAAGGTQITTATALI
CVTPFLPGRAHPAQPPSHADHTPMPQAIIYNLWFGYDVKRAVEEPRLHNQLLPNVTTVERNIDQAVTAAL
ETRHHHTQIASTFIAVVQAIVRTAGGWAAASDSRKGGEPAGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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