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Report for CCDS1717.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1717.1 Public Homo sapiens 2 POMC 24 110 108 CCDS HistoryNCBI Gene:5443Re-query CCDS DB by CCDS ID:1717.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1717.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264708.7 ENSP00000264708.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000264708.7Link to Ensembl Protein Viewer:ENSP00000264708.3Re-query CCDS DB by Nucleotide ID:ENST00000264708Re-query CCDS DB by Protein ID:ENSP00000264708
Original member Current member EBI ENST00000380794.5 ENSP00000370171.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380794.5Link to Ensembl Protein Viewer:ENSP00000370171.1Re-query CCDS DB by Nucleotide ID:ENST00000380794Re-query CCDS DB by Protein ID:ENSP00000370171
Original member Current member EBI ENST00000395826.7 ENSP00000379170.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395826.7Link to Ensembl Protein Viewer:ENSP00000379170.2Re-query CCDS DB by Nucleotide ID:ENST00000395826Re-query CCDS DB by Protein ID:ENSP00000379170
Original member Current member EBI ENST00000405623.5 ENSP00000384092.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405623.5Link to Ensembl Protein Viewer:ENSP00000384092.1Re-query CCDS DB by Nucleotide ID:ENST00000405623Re-query CCDS DB by Protein ID:ENSP00000384092
Original member Current member NCBI NM_000939.4 NP_000930.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000939.4Link to Protein Sequence:NP_000930.1Re-query CCDS DB by Nucleotide ID:NM_000939Re-query CCDS DB by Protein ID:NP_000930Link to BLAST:NP_000930.1
Original member Current member NCBI NM_001035256.3 NP_001030333.1 Accepted alive Link to Nucleotide Sequence:NM_001035256.3Link to Protein Sequence:NP_001030333.1Re-query CCDS DB by Nucleotide ID:NM_001035256Re-query CCDS DB by Protein ID:NP_001030333Link to BLAST:NP_001030333.1
Original member Current member NCBI NM_001319204.2 NP_001306133.1 Accepted alive Link to Nucleotide Sequence:NM_001319204.2Link to Protein Sequence:NP_001306133.1Re-query CCDS DB by Nucleotide ID:NM_001319204Re-query CCDS DB by Protein ID:NP_001306133Link to BLAST:NP_001306133.1
Original member Current member NCBI NM_001319205.2 NP_001306134.1 Accepted alive Link to Nucleotide Sequence:NM_001319205.2Link to Protein Sequence:NP_001306134.1Re-query CCDS DB by Nucleotide ID:NM_001319205Re-query CCDS DB by Protein ID:NP_001306134Link to BLAST:NP_001306134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000930.1 267 P01189 267 100% 0 0
NP_001030333.1 267 P01189 267 100% 0 0
NP_001306133.1 267 P01189 267 100% 0 0
NP_001306134.1 267 P01189 267 100% 0 0

Chromosomal Locations for CCDS 1717.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25161081 25161752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25164641 25164772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGCCGAGATCGTGCTGCAGCCGCTCGGGGGCCCTGTTGCTGGCCTTGCTGCTTCAGGCCTCCATGGAAG
TGCGTGGCTGGTGCCTGGAGAGCAGCCAGTGTCAGGACCTCACCACGGAAAGCAACCTGCTGGAGTGCAT
CCGGGCCTGCAAGCCCGACCTCTCGGCCGAGACTCCCATGTTCCCGGGAAATGGCGACGAGCAGCCTCTG
ACCGAGAACCCCCGGAAGTACGTCATGGGCCACTTCCGCTGGGACCGATTCGGCCGCCGCAACAGCAGCA
GCAGCGGCAGCAGCGGCGCAGGGCAGAAGCGCGAGGACGTCTCAGCGGGCGAAGACTGCGGCCCGCTGCC
TGAGGGCGGCCCCGAGCCCCGCAGCGATGGTGCCAAGCCGGGCCCGCGCGAGGGCAAGCGCTCCTACTCC
ATGGAGCACTTCCGCTGGGGCAAGCCGGTGGGCAAGAAGCGGCGCCCAGTGAAGGTGTACCCTAACGGCG
CCGAGGACGAGTCGGCCGAGGCCTTCCCCCTGGAGTTCAAGAGGGAGCTGACTGGCCAGCGACTCCGGGA
GGGAGATGGCCCCGACGGCCCTGCCGATGACGGCGCAGGGGCCCAGGCCGACCTGGAGCACAGCCTGCTG
GTGGCGGCCGAGAAGAAGGACGAGGGCCCCTACAGGATGGAGCACTTCCGCTGGGGCAGCCCGCCCAAGG
ACAAGCGCTACGGCGGTTTCATGACCTCCGAGAAGAGCCAGACGCCCCTGGTGACGCTGTTCAAAAACGC
CATCATCAAGAACGCCTACAAGAAGGGCGAGTGA

Translation (267 aa):
MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPMFPGNGDEQPL
TENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGGPEPRSDGAKPGPREGKRSYS
MEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKRELTGQRLREGDGPDGPADDGAGAQADLEHSLL
VAAEKKDEGPYRMEHFRWGSPPKDKRYGGFMTSEKSQTPLVTLFKNAIIKNAYKKGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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