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Report for CCDS46220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46220.1 Public Homo sapiens 2 SNTG2 24 110 108 CCDS HistoryNCBI Gene:54221Re-query CCDS DB by CCDS ID:46220.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46220.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308624.10 ENSP00000311837.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308624.10Link to Ensembl Protein Viewer:ENSP00000311837.5Re-query CCDS DB by Nucleotide ID:ENST00000308624Re-query CCDS DB by Protein ID:ENSP00000311837
Original member Current member NCBI NM_018968.4 NP_061841.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018968.4Link to Protein Sequence:NP_061841.2Re-query CCDS DB by Nucleotide ID:NM_018968Re-query CCDS DB by Protein ID:NP_061841Link to BLAST:NP_061841.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061841.2 539 Q9NY99-1 539 100% 0 0

Chromosomal Locations for CCDS 46220.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 950997 951068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1083518 1083655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1098196 1098252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1098353 1098410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1137622 1137665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1137768 1137809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1165548 1165635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1173092 1173183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1209103 1209230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1237888 1238017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1239738 1239776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1247327 1247443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1259370 1259441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1267365 1267571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1308494 1308586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1316265 1316375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 1367343 1367474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGGCACCGAGGGACCCCCGCCCCCGGCCGCCTCCCGCGGACGCCAGGGCTGCCTGCTGGTACCTGCGC
GGACGAAAACCACTATTGCTCTGTTGTATGATGAAGAGTCCGAAAATGCCTATGACATCCGGCTGAAGCT
GACGAAAGAGGTGCTGACAATTCAGAAACAAGATGTTGTCTGTGTGGGCGGAAGCCACCAGGGCAGGAAT
CGCAGAACTGTTACACTCCGCAGACAGCCAGTTGGCGGCTTGGGCCTGAGTATAAAGGGAGGTTCTGAGC
ACAACGTCCCTGTCGTCATATCAAAAATATTCGAAGACCAAGCAGCTGACCAGACAGGGATGTTGTTCGT
AGGAGATGCTGTTCTCCAGGTTAATGGCATACATGTAGAAAATGCAACTCATGAAGAAGTGGTGCATCTG
CTGAGAAATGCTGGCGATGAAGTTACCATCACCGTTGAGTATCTCAGGGAAGCGCCGGCATTTCTGAAGC
TCCCGTTAGGGTCCCCAGGGCCATCCAGCGACCACAGCAGTGGGGCCTCCTCTCCCCTCTTTGACAGCGG
TTTGCATCTGAACGGAAACTCCAGTACCACAGCCCCATCGTCACCTTCCTCGCCCATAGCTAAGGACCCG
AGGTATGAGAAGCGCTGGCTGGACACCTTGTCCGTGCCTCTGTCCATGGCTCGCATCTCAAGGTACAAAG
CCGGAACGGAAAAATTAAGGTGGAATGCGTTCGAGGTGCTCGCCCTGGACGGAGTCAGCTCTGGGATCCT
CCGGTTTTACACAGCCCAGGATGGCACCGACTGGCTGCGGGCGGTCTCAGCCAACATCAGGGAGCTGACA
CTTCAGAACATGAAGATGGCGAACAAATGCTGCTCTCCTTCCGACCAGGTTGTGCATATGGGGTGGGTAA
ATGAGAAACTCCAAGGAGCTGACTCCTCTCAAACCTTCAGACCCAAGTTCCTAGCACTGAAGGGCCCGTC
CTTCTACGTTTTCAGCACTCCTCCGGTGAGCACATTCGATTGGGTGCGAGCAGAAAGGACCTATCACCTC
TGTGAGGTGCTATTTAAAGTTCACAAGTTCTGGCTCACAGAGGACTGCTGGTTGCAAGCAAACTTGTATC
TGGGTCTTCAAGATTTTGACTTTGAGGACCAGAGGCCCTATTGCTTCAGCATCGTGGCCGGCCATGGGAA
GAGCCATGTTTTCAACGTGGAGCTTGGCAGCGAGCTGGCCATGTGGGAGAAGTCCTTCCAAAGAGCCACG
TTCATGGAAGTTCAGAGAACCGGGTCCAGAACATACATGTGCAGCTGGCAAGGAGAGATGCTGTGTTTCA
CGGTGGATTTCGCGTTGGGATTTACCTGTTTTGAGAGTAAGACCAAGAATGTGCTCTGGAGATTTAAATT
TTCCCAGCTTAAGGGATCTTCAGATGATGGGAAAACTCGAGTAAAGCTGCTGTTTCAGAATCTGGACACC
AAACAGATTGAGACGAAGGAACTCGAGTTCCAGGACCTGAGGGCTGTCCTGCACTGCATCCACTCCTTCA
TAGCAGCCAAGGTGGCCTCCGTGGACCCCGGCTTCATGGACAGTCAGAGTCTTGCCAGAAAATACATGTA
CAGCAGCTAA

Translation (539 aa):
MGTEGPPPPAASRGRQGCLLVPARTKTTIALLYDEESENAYDIRLKLTKEVLTIQKQDVVCVGGSHQGRN
RRTVTLRRQPVGGLGLSIKGGSEHNVPVVISKIFEDQAADQTGMLFVGDAVLQVNGIHVENATHEEVVHL
LRNAGDEVTITVEYLREAPAFLKLPLGSPGPSSDHSSGASSPLFDSGLHLNGNSSTTAPSSPSSPIAKDP
RYEKRWLDTLSVPLSMARISRYKAGTEKLRWNAFEVLALDGVSSGILRFYTAQDGTDWLRAVSANIRELT
LQNMKMANKCCSPSDQVVHMGWVNEKLQGADSSQTFRPKFLALKGPSFYVFSTPPVSTFDWVRAERTYHL
CEVLFKVHKFWLTEDCWLQANLYLGLQDFDFEDQRPYCFSIVAGHGKSHVFNVELGSELAMWEKSFQRAT
FMEVQRTGSRTYMCSWQGEMLCFTVDFALGFTCFESKTKNVLWRFKFSQLKGSSDDGKTRVKLLFQNLDT
KQIETKELEFQDLRAVLHCIHSFIAAKVASVDPGFMDSQSLARKYMYSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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