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Report for CCDS70643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70643.1 Public Mus musculus 15 Zftraf1 23 108 98 CCDS HistoryNCBI Gene:54151Re-query CCDS DB by CCDS ID:70643.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176274.1 ENSMUSP00000134739.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176274.1Link to Ensembl Protein Viewer:ENSMUSP00000134739.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176274Re-query CCDS DB by Protein ID:ENSMUSP00000134739
Original member NCBI NM_001276321.1 NP_001263250.1 Updated not alive Link to Nucleotide Sequence:NM_001276321.1Link to Protein Sequence:NP_001263250.1Re-query CCDS DB by Nucleotide ID:NM_001276321Re-query CCDS DB by Protein ID:NP_001263250
Current member NCBI NM_001276321.2 NP_001263250.1 Accepted alive Link to Nucleotide Sequence:NM_001276321.2Link to Protein Sequence:NP_001263250.1Re-query CCDS DB by Nucleotide ID:NM_001276321Re-query CCDS DB by Protein ID:NP_001263250Link to BLAST:NP_001263250.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263250.1 412 P0DW87-4 412 100% 0 0

Chromosomal Locations for CCDS 70643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76647338 76647768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76648099 76648310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76648941 76649179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76656360 76656716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGTCCGGCGCCGAGGAGGCCGGCGGGGGTGGCCCGGCTGCAGGGCCCGCGGGTGCCGTGCCGGCCGGGG
TCGGGGTAGGGGCCGGGCCTGGGGCTGCCGCGGGGCCGGCTGCGGCGGCTCTGGGCGAGGCGGCGGGGCC
CGGGATCCCGGACGAGGCGGCCCTGGCCGGCGCTCGGCAGCTGCAAGAGGCGGCCGGCGACCCCGACGCG
CCGCCCAAGAAGCGGCTGCGGGCGGCCGAGGCAGCCGAGGCGGCGGCGGCGGCAGTGGCAGCGGGCAGTG
GAAAGCTGGAGGAGCGTCTCTACTCGGTGCTGTGCTGCACCGTGTGCCTGGACCTGCCCAAGGCTTCCGT
GTACCAGTGTACTAACGGTCACTTGATGTGCGCTGGCTGTTTTATCCACCTACTAGCAGATGCCCGGCTG
AAGGAGGAGCAGGCCACATGTCCCAACTGTCGTTGTGAGATCAGTAAGAGCCTCTGCTGCCGGAACCTGG
CTGTGGAGAAAGCTGTGAGCGAGCTGCCTTCAGAGTGTGGCTTCTGTCTGCGTCAGTTCCCTCGCTCCCT
CCTAGAGAGGCACCAGAAAGAGGAATGCCAGGACAGGGTGACACAGTGCAAGTACAAGCGTATTGGCTGC
CCGTGGCATGGCCCTTTCCATGAGCTGACAGTGCATGAAGCTGCGTGTGCTCACCCGACCAAGACAGGCA
ACGAGCTGATGGAGATCCTCGACGAGATGGACCAGAGCCACCGCAAGGAGATGCAGCTCTACAACAGCAT
CTTCAGCCTGCTCAGCTTTGAGAAGATCGGCTACACAGTCTGGGTGTTTGGGCCTTACCTTTGGAGCACG
GAGCAAGAAGAGCATTCCATCAAGTCAGATCCTGTCTACAGATGTTCACTGAAGGCTACAGAGCCTCCCG
AGGCTGGCAAGAAGCTGTTTGGAGACAGGGTTCCAGAACAAGCTGAGGGTCTGAGCTCAAACTGTAGAAC
TGGGAATGGATGCCCACAAATGAGTAAGCTGGACCAGGCCAGGCCCACTGGATCTCATGGCTCCCGGGCA
TCTGTCACCAGCTCTGAACATGTCGGGAGCAAGAGCCAGGCCACACCTTGGGCCAGAGAACACGAAGCAC
CTGCTGATACTGGGGCCACTCAGGGAAACTCCATTCCCTCTACTGCTCAGCCTGCGGCAGGTGGCCAGCT
CAGAGCGCCCAGGGCAGGCTTGGACAGCCAGTCATGCCATGCTGCCTAG

Translation (412 aa):
MSGAEEAGGGGPAAGPAGAVPAGVGVGAGPGAAAGPAAAALGEAAGPGIPDEAALAGARQLQEAAGDPDA
PPKKRLRAAEAAEAAAAAVAAGSGKLEERLYSVLCCTVCLDLPKASVYQCTNGHLMCAGCFIHLLADARL
KEEQATCPNCRCEISKSLCCRNLAVEKAVSELPSECGFCLRQFPRSLLERHQKEECQDRVTQCKYKRIGC
PWHGPFHELTVHEAACAHPTKTGNELMEILDEMDQSHRKEMQLYNSIFSLLSFEKIGYTVWVFGPYLWST
EQEEHSIKSDPVYRCSLKATEPPEAGKKLFGDRVPEQAEGLSSNCRTGNGCPQMSKLDQARPTGSHGSRA
SVTSSEHVGSKSQATPWAREHEAPADTGATQGNSIPSTAQPAAGGQLRAPRAGLDSQSCHAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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