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Report for CCDS30680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30680.1 Public Homo sapiens 1 RHBDL2 24 110 108 CCDS HistoryNCBI Gene:54933Re-query CCDS DB by CCDS ID:30680.1Re-query CCDS DB by GeneID:54933See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289248.6 ENSP00000289248.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000289248.6Link to Ensembl Protein Viewer:ENSP00000289248.2Re-query CCDS DB by Nucleotide ID:ENST00000289248Re-query CCDS DB by Protein ID:ENSP00000289248
Original member Current member EBI ENST00000372990.6 ENSP00000362081.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372990.6Link to Ensembl Protein Viewer:ENSP00000362081.1Re-query CCDS DB by Nucleotide ID:ENST00000372990Re-query CCDS DB by Protein ID:ENSP00000362081
Original member Current member NCBI NM_017821.5 NP_060291.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017821.5Link to Protein Sequence:NP_060291.2Re-query CCDS DB by Nucleotide ID:NM_017821Re-query CCDS DB by Protein ID:NP_060291Link to BLAST:NP_060291.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060291.2 303 Q9NX52-1 303 100% 0 0

Chromosomal Locations for CCDS 30680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38886504 38886683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38887963 38888024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38893164 38893224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38895969 38896069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38911322 38911434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38915562 38915710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 38918967 38919212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGCTGCTGTTCATGATCTGGAGATGGAGAGCATGAATCTGAATATGGGGAGAGAGATGAAAGAAGAGC
TGGAGGAAGAGGAGAAAATGAGAGAGGATGGGGGAGGTAAAGATCGGGCCAAGAGTAAAAAGGTCCACAG
GATTGTCTCAAAATGGATGCTGCCCGAAAAGTCCCGAGGAACATACTTGGAGAGAGCTAACTGCTTCCCG
CCTCCCGTGTTCATCATCTCCATCAGCCTGGCCGAGCTGGCAGTGTTTATTTACTATGCTGTGTGGAAGC
CTCAGAAACAGTGGATCACGTTGGACACAGGCATCTTGGAGAGTCCCTTTATCTACAGTCCTGAGAAGAG
GGAGGAAGCCTGGAGGTTTATCTCATACATGCTGGTACATGCTGGAGTTCAGCACATCTTGGGGAATCTT
TGTATGCAGCTTGTTTTGGGTATTCCCTTGGAAATGGTCCACAAAGGCCTCCGTGTGGGGCTGGTGTACC
TGGCAGGAGTGATTGCAGGGTCCCTTGCCAGCTCCATCTTTGACCCACTCAGATATCTTGTGGGAGCTTC
AGGAGGAGTCTATGCTCTGATGGGAGGCTATTTTATGAATGTTCTGGTGAATTTTCAAGAAATGATTCCT
GCCTTTGGAATTTTCAGACTGCTGATCATCATCCTGATAATTGTGTTGGACATGGGATTTGCTCTCTATA
GAAGGTTCTTTGTTCCTGAAGATGGGTCTCCGGTGTCTTTTGCAGCTCACATTGCAGGTGGATTTGCTGG
AATGTCCATTGGCTACACGGTGTTTAGCTGCTTTGATAAAGCACTGCTGAAAGATCCAAGGTTTTGGATA
GCAATTGCTGCATATTTAGCTTGTGTCTTATTTGCTGTGTTTTTCAACATTTTCCTATCTCCAGCAAACT
GA

Translation (303 aa):
MAAVHDLEMESMNLNMGREMKEELEEEEKMREDGGGKDRAKSKKVHRIVSKWMLPEKSRGTYLERANCFP
PPVFIISISLAELAVFIYYAVWKPQKQWITLDTGILESPFIYSPEKREEAWRFISYMLVHAGVQHILGNL
CMQLVLGIPLEMVHKGLRVGLVYLAGVIAGSLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFQEMIP
AFGIFRLLIIILIIVLDMGFALYRRFFVPEDGSPVSFAAHIAGGFAGMSIGYTVFSCFDKALLKDPRFWI
AIAAYLACVLFAVFFNIFLSPAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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