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Report for CCDS18785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18785.1 Public Mus musculus 4 Rcan3 23 108 98 CCDS HistoryNCBI Gene:53902Re-query CCDS DB by CCDS ID:18785.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030606.13 ENSMUSP00000030606.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030606.13Link to Ensembl Protein Viewer:ENSMUSP00000030606.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030606Re-query CCDS DB by Protein ID:ENSMUSP00000030606
Original member NCBI NM_022980.4 NP_075356.1 Updated not alive Link to Nucleotide Sequence:NM_022980.4Link to Protein Sequence:NP_075356.1Re-query CCDS DB by Nucleotide ID:NM_022980Re-query CCDS DB by Protein ID:NP_075356
Current member NCBI NM_022980.5 NP_075356.1 Accepted alive Link to Nucleotide Sequence:NM_022980.5Link to Protein Sequence:NP_075356.1Re-query CCDS DB by Nucleotide ID:NM_022980Re-query CCDS DB by Protein ID:NP_075356Link to BLAST:NP_075356.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075356.1 239 Q9JKK0 239 100% 0 0

Chromosomal Locations for CCDS 18785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135416420 135416598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135418380 135418551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135420246 135420419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135425214 135425408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGCTCCGAGACAGCCTGAAATCTTGGAATGACAGCCAGTCAGACCTCTGTAGCAGCGACCAGGAGGAGG
AAGAGGAGATGGTCTTCGGTGAAAATGAGGACGGACTGGAAGAGATGATGGACCTAAGTGACCTGCCCAC
CTCACTCTTTGCTTGCAGTGTCCATGAAGCAGTGTTTGAGGTCCAAGAGCAAAAGGAGAGGTTTGAGGCC
CTGTTCACCCTCTACGATGACCAGGTCACATTCCAGTTGTTCAAGAGCTTTCGCAGAGTGAGGATCAACT
TCAGCAAGCCCGAGGCTGCGGCAAGAGCGCGGATAGAGCTCCACGAGAGTGAGTTCCACGGACGGAAGCT
GAAGCTTTACTTCGCACAGGTGCAGGTGTCCGGGGAGGCCCGGGACAAGTCCTACTTACTGCCACCACAA
CCCACCAAGCAGTTCCTCATCTCCCCTCCCGCCTCACCCCCCGTGGGGTGGAAGCAGAGTGAAGATGCGA
TGCCAGTGATCAACTATGACCTGCTCTGCGCTGTCTCCAAGCTGGGCCCAGGGGAGAAATACGAACTGCA
CGCGGGAACCGAGTCCACCCCCAGTGTGGTGGTGCACGTCTGTGAGAGCGAAACTGAAGAGGAAGAAGAC
ACAAAAAATCCAAAACAGAAAATCACGCAGACGCGGCGCCCGGAGGCTCCCACGGCGGCACTGAGTGAGC
GGCTGGACTGTGCACTCTGA

Translation (239 aa):
MLRDSLKSWNDSQSDLCSSDQEEEEEMVFGENEDGLEEMMDLSDLPTSLFACSVHEAVFEVQEQKERFEA
LFTLYDDQVTFQLFKSFRRVRINFSKPEAAARARIELHESEFHGRKLKLYFAQVQVSGEARDKSYLLPPQ
PTKQFLISPPASPPVGWKQSEDAMPVINYDLLCAVSKLGPGEKYELHAGTESTPSVVVHVCESETEEEED
TKNPKQKITQTRRPEAPTAALSERLDCAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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