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Report for CCDS36864.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36864.1 Public Mus musculus 14 Timm23 23 108 98 CCDS HistoryNCBI Gene:53600Re-query CCDS DB by CCDS ID:36864.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36864.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013845.12 ENSMUSP00000013845.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013845.12Link to Ensembl Protein Viewer:ENSMUSP00000013845.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000013845Re-query CCDS DB by Protein ID:ENSMUSP00000013845
Original member Current member NCBI NM_016897.3 NP_058593.2 Accepted alive Link to Nucleotide Sequence:NM_016897.3Link to Protein Sequence:NP_058593.2Re-query CCDS DB by Nucleotide ID:NM_016897Re-query CCDS DB by Protein ID:NP_058593Link to BLAST:NP_058593.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058593.2 209 Q9WTQ8 209 99.0431% 0 2

Chromosomal Locations for CCDS 36864.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 32180555 32180670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32189144 32189254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32191342 32191400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32193403 32193487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32193854 32193947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32198969 32199027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 32201643 32201748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGAAGGTGGCGGAGGAAGTAGCAACAAATCCACCAGCGGGTTAGCTGGCTTCTTCGGAGCCGGAGGAG
CGGGTTACTCGAACGCTGATTTGGCCGGCGTCCCGCTGACTGGTATGAACCCCCTGTCTCCTTATTTAAA
TGTGGATCCACGCTATCTCGTTCAGGATACTGATGAATTTATTTTGCCAACTGGAGCTAATAAAACCCGA
GGCAGATTTGAACTAGCTTTCTTTACCATTGGAGGATGTTGCATGACAGGGGCCGCATTCGGGGCAATGA
ACGGTCTTCGTTTAGGATTGAAGGAAACCCAGAGCATGGCCTGGTCCAAACCAAGAAATGTACAGATTTT
GAATATGGTGACTAGGCAAGGAGCACTTTGGGCTAATACTCTAGGCTCCCTGGCTTTGCTCTATAGTGCT
TTTGGTGTTATCATTGAGAAAACACGGGGTGCAGAAGATGACCTCAACACAGTAGCAGCTGGAACCATGA
CCGGGATGTTGTATAAATGTACAGGTGGTCTTCGAGGAATAGCACGCGGTGGCCTGGCAGGACTGACACT
CACCAGTCTCTATGCACTGTATAACAACTGGGAGCACATGAAAGGTTCCCTGCTCCAACAGTCACTCTGA

Translation (209 aa):
MEGGGGSSNKSTSGLAGFFGAGGAGYSNADLAGVPLTGMNPLSPYLNVDPRYLVQDTDEFILPTGANKTR
GRFELAFFTIGGCCMTGAAFGAMNGLRLGLKETQSMAWSKPRNVQILNMVTRQGALWANTLGSLALLYSA
FGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGGLRGIARGGLAGLTLTSLYALYNNWEHMKGSLLQQSL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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