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Report for CCDS38640.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38640.1 Public Mus musculus 3 Hadh 23 108 98 CCDS HistoryNCBI Gene:15107Re-query CCDS DB by CCDS ID:38640.1Re-query CCDS DB by GeneID:15107See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38640.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029610.8 ENSMUSP00000029610.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029610.8Link to Ensembl Protein Viewer:ENSMUSP00000029610.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029610Re-query CCDS DB by Protein ID:ENSMUSP00000029610
Original member Current member NCBI NM_008212.4 NP_032238.2 Accepted alive Link to Nucleotide Sequence:NM_008212.4Link to Protein Sequence:NP_032238.2Re-query CCDS DB by Nucleotide ID:NM_008212Re-query CCDS DB by Protein ID:NP_032238Link to BLAST:NP_032238.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032238.2 314 Q61425-1 314 100% 0 0

Chromosomal Locations for CCDS 38640.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 131234169 131234287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131235543 131235659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131240937 131241009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131242516 131242605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131245160 131245286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131248416 131248573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131249803 131249931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 131271876 131272007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCGTTCGTGACCAGGCAATTCTTGCGCTCCATGTCCTCCTCTTCCTCTGCGTCGGCGGCCGCCAAGA
AGATCCTGATCAAGCATGTGACCGTCATCGGCGGCGGGCTGATGGGCGCCGGCATCGCGCAGGTAGCTGC
AGCAACTGGCCATACAGTAGTATTGGTGGACCAAACGGAAGACATCCTGGCAAAATCCAAGAAGGGAATT
GAGGAGAGTCTAAAGAGGATGGCAAAGAAGAAGTTCACAGAAAACCCTAAGGCTGGAGATGAGTTTGTGG
AGAAGACCCTGAGCTGCCTTTCAACCAGCACCGATGCGGCATCCGTGGTGCACAGCACAGACCTGGTGGT
GGAGGCCATTGTGGAGAACCTGAAGCTGAAGAACGAGCTGTTCCAGAGGCTGGACAAGTTCGCTGCAGAA
CACACCATCTTTGCCAGCAACACGTCTTCTTTGCAGATCACAAACATAGCCAATGCCACCACCAGACAAG
ACCGATTTGCTGGCCTCCACTTTTTCAACCCCGTGCCTATGATGAAGCTTGTGGAGGTCATCAAAACACC
GATGACCAGCCAGAAGACATTTGAATCTCTGGTGGACTTTTGTAAAACCTTAGGAAAGCATCCTGTCTCT
TGCAAGGACACTCCTGGATTCATCGTGAACCGACTCTTGGTGCCATACCTCATTGAGGCCGTCAGGCTAC
ACGAGCGAGGCGATGCGTCTAAGGAAGACATCGATACAGCGATGAAGCTGGGAGCTGGGTATCCCATGGG
TCCGTTTGAGCTTCTTGACTATGTTGGACTGGATACTACAAAGTTCATCTTGGACGGGTGGCATGAAATG
GAGCCAGAGAACCCCTTATTTCAGCCCAGTCCTTCCATGAATAATCTGGTGGCCCAGAAGAAGCTGGGCA
AGAAGACCGGAGAAGGATTTTACAAATACAAGTGA

Translation (314 aa):
MAFVTRQFLRSMSSSSSASAAAKKILIKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGI
EESLKRMAKKKFTENPKAGDEFVEKTLSCLSTSTDAASVVHSTDLVVEAIVENLKLKNELFQRLDKFAAE
HTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPMMKLVEVIKTPMTSQKTFESLVDFCKTLGKHPVS
CKDTPGFIVNRLLVPYLIEAVRLHERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFILDGWHEM
EPENPLFQPSPSMNNLVAQKKLGKKTGEGFYKYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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