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Report for CCDS70169.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70169.1 Public Mus musculus 11 Itk 23 108 98 CCDS HistoryNCBI Gene:16428Re-query CCDS DB by CCDS ID:70169.1Re-query CCDS DB by GeneID:16428See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70169.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109237.8 ENSMUSP00000104860.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109237.8Link to Ensembl Protein Viewer:ENSMUSP00000104860.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109237Re-query CCDS DB by Protein ID:ENSMUSP00000104860
Original member Current member NCBI NM_001281965.1 NP_001268894.1 Accepted alive Link to Nucleotide Sequence:NM_001281965.1Link to Protein Sequence:NP_001268894.1Re-query CCDS DB by Nucleotide ID:NM_001281965Re-query CCDS DB by Protein ID:NP_001268894Link to BLAST:NP_001268894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268894.1 625 Q03526 625 100% 0 0

Chromosomal Locations for CCDS 70169.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46327457 46327528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46331835 46331992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46334875 46334993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46335078 46335142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46336349 46336565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46338105 46338276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46340653 46340727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46341107 46341237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46342398 46342480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46347871 46347925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46353877 46353942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46355725 46355876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46360281 46360321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46363797 46363925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46365976 46366075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46367831 46367935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46389273 46389410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGAACAACTTCATCCTCCTGGAAGAACAGCTGATCAAGAAGTCCCAACAGAAGAGAAGGACTTCTCCCT
CGAATTTTAAAGTTCGTTTCTTTGTCTTAACGAAAGCCAGCCTGGCCTACTTTGAGGACCGCCACGGGAA
GAAGCGCACGTTGAAGGGCTCCATTGAACTCTCCAGAATCAAGTGTGTGGAGATTGTCAAGAGTGACATT
AGCATCCCGTGCCACTATAAATACCCTTTTCAGACTCTTGTGTACTTACAGGTCGTGCATGACAACTATC
TCCTGTATGTGTTTGCTCCAGACTGTGAGAGTCGGCAGCGCTGGGTGCTGACCCTTAAAGAAGAAACGAG
GAATAACAACAGCCTGGTATCCAAGTATCACCCTAATTTCTGGATGGATGGGCGGTGGAGGTGCTGCTCC
CAGCTGGAGAAGCCTGCTGTAGGCTGTGCTCCCTACGACCCATCCAAGAATGCTTCAAAGAAGCCTCTTC
CTCCTACTCCTGAAGACAACAGGCGGTCATTTCAGGAACCTGAAGAAACCCTGGTCATTGCCTTGTACGA
CTACCAAACCAACGACCCTCAGGAGCTCGCACTGCGGTGTGATGAAGAGTACTACCTGCTGGACAGCTCC
GAGATCCACTGGTGGAGGGTTCAAGACAAAAATGGGCATGAAGGATATGCACCAAGCAGTTACCTGGTAG
AAAAATCTCCAAATAACCTTGAAACCTATGAGTGGTACAATAAAAGCATCAGCCGCGACAAAGCTGAAAA
ACTTCTTTTGGACACAGGTAAAGAAGGAGCTTTCATGGTCCGAGATTCCAGGACACCCGGGACATACACA
GTCTCTGTTTTCACCAAGGCCATCATAAGTGAGAACCCCTGTATAAAACATTATCACATCAAAGAAACAA
ATGACAGCCCCAAGCGCTACTACGTGGCTGAGAAGTATGTGTTTGACTCCATCCCTCTCCTCATCCAGTA
TCACCAGTACAATGGAGGAGGTTTGGTCACTCGACTCCGCTATCCAGTTTGCTCCTGGAGACAAAAAGCC
CCTGTCACAGCAGGGCTAAGATATGGGAAGTGGGTGATCCAACCCTCAGAGCTAACGTTCGTGCAGGAGA
TTGGCAGCGGGCAGTTTGGGCTGGTGCATCTCGGCTACTGGCTCAACAAGGACAAGGTGGCCATCAAGAC
CATTCAGGAAGGGGCGATGTCAGAAGAAGACTTTATCGAGGAGGCGGAAGTCATGATGAAACTCTCTCAC
CCCAAACTGGTGCAGCTCTATGGGGTGTGCCTGGAGCAAGCCCCCATCTGCCTGGTGTTTGAGTTCATGG
AGCACGGCTGCCTGTCGGATTACCTTCGAAGTCAGCGGGGTCTCTTTGCTGCGGAGACCCTGCTGGGCAT
GTGCCTGGATGTGTGTGAGGGCATGGCCTACCTGGAAAAAGCTTGTGTCATCCACAGAGACCTGGCAGCC
AGAAACTGTTTGGTGGGAGAAAACCAGGTCATCAAGGTGTCCGACTTTGGGATGACAAGATTTGTCCTTG
ATGATCAATATACCAGCTCCACGGGCACCAAATTCCCAGTGAAGTGGGCATCCCCAGAGGTGTTCTCCTT
TAGTCGCTATAGCAGCAAGTCAGATGTGTGGTCGTTTGGTGTACTGATGTGGGAAGTCTTCAGTGAAGGC
AAAATCCCATACGAAAACCGAAGCAATTCCGAGGTCGTGGAAGATATCAGCACTGGCTTTCGGTTATACA
AGCCCCGCCTGGCCTCCTGTCATGTCTACCAGATCATGAATCATTGCTGGAAAGAGAAACCAGAAGACCG
GCCACCCTTCTCCCAGCTGTTAAGCCAGCTGGCTGAAATCGCAGAAGCTGGGCTTTAG

Translation (625 aa):
MNNFILLEEQLIKKSQQKRRTSPSNFKVRFFVLTKASLAYFEDRHGKKRTLKGSIELSRIKCVEIVKSDI
SIPCHYKYPFQTLVYLQVVHDNYLLYVFAPDCESRQRWVLTLKEETRNNNSLVSKYHPNFWMDGRWRCCS
QLEKPAVGCAPYDPSKNASKKPLPPTPEDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSS
EIHWWRVQDKNGHEGYAPSSYLVEKSPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYT
VSVFTKAIISENPCIKHYHIKETNDSPKRYYVAEKYVFDSIPLLIQYHQYNGGGLVTRLRYPVCSWRQKA
PVTAGLRYGKWVIQPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIQEGAMSEEDFIEEAEVMMKLSH
PKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRSQRGLFAAETLLGMCLDVCEGMAYLEKACVIHRDLAA
RNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEG
KIPYENRSNSEVVEDISTGFRLYKPRLASCHVYQIMNHCWKEKPEDRPPFSQLLSQLAEIAEAGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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