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Report for CCDS11586.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11586.1 Public Homo sapiens 17 MMD 24 110 108 CCDS HistoryNCBI Gene:23531Re-query CCDS DB by CCDS ID:11586.1Re-query CCDS DB by GeneID:23531See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11586.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262065.8 ENSP00000262065.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262065.8Link to Ensembl Protein Viewer:ENSP00000262065.3Re-query CCDS DB by Nucleotide ID:ENST00000262065Re-query CCDS DB by Protein ID:ENSP00000262065
Original member Current member NCBI NM_012329.3 NP_036461.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012329.3Link to Protein Sequence:NP_036461.2Re-query CCDS DB by Nucleotide ID:NM_012329Re-query CCDS DB by Protein ID:NP_036461Link to BLAST:NP_036461.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036461.2 238 Q15546 238 100% 0 0

Chromosomal Locations for CCDS 11586.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 55394334 55394534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55401469 55401538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55403767 55403868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55407746 55407820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55411257 55411417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55414151 55414232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 55421670 55421695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGCGGTTCAAGAATCGATTCCAGCGGTTCATGAACCATCGAGCTCCAGCCAATGGCCGCTACAAGCCAA
CTTGCTATGAACATGCTGCTAACTGTTACACACACGCATTCCTCATTGTTCCGGCCATCGTGGGCAGTGC
CCTCCTCCATCGGCTGTCTGATGACTGCTGGGAAAAGATAACAGCATGGATTTATGGAATGGGACTCTGT
GCCCTCTTCATCGTTTCTACAGTATTTCACATTGTATCATGGAAAAAGAGCCACTTAAGGACAGTGGAGC
ATTGTTTTCACATGTGTGATAGAATGGTTATCTATTTCTTCATTGCTGCTTCTTATGCTCCATGGTTAAA
TCTTCGTGAACTTGGACCCCTGGCATCTCATATGCGTTGGTTTATCTGGCTCATGGCAGCTGGAGGAACC
ATTTATGTATTTCTCTACCATGAAAAATATAAGGTGGTTGAACTCTTTTTCTATCTCACAATGGGATTCT
CTCCAGCCTTGGTGGTGACATCAATGAACAACACCGATGGACTTCAGGAACTTGCCTGTGGGGGCTTAAT
TTATTGCTTGGGAGTTGTGTTCTTCAAGAGTGATGGCATCATTCCATTTGCCCACGCCATCTGGCACCTG
TTTGTGGCCACGGCAGCTGCAGTGCATTACTACGCCATTTGGAAATACCTTTACCGAAGTCCTACGGACT
TTATGCGGCATTTATGA

Translation (238 aa):
MRFKNRFQRFMNHRAPANGRYKPTCYEHAANCYTHAFLIVPAIVGSALLHRLSDDCWEKITAWIYGMGLC
ALFIVSTVFHIVSWKKSHLRTVEHCFHMCDRMVIYFFIAASYAPWLNLRELGPLASHMRWFIWLMAAGGT
IYVFLYHEKYKVVELFFYLTMGFSPALVVTSMNNTDGLQELACGGLIYCLGVVFFKSDGIIPFAHAIWHL
FVATAAAVHYYAIWKYLYRSPTDFMRHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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