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Report for CCDS35069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35069.1 Public Homo sapiens 9 PHF2 24 110 108 CCDS HistoryNCBI Gene:5253Re-query CCDS DB by CCDS ID:35069.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35069.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359246.9 ENSP00000352185.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359246.9Link to Ensembl Protein Viewer:ENSP00000352185.4Re-query CCDS DB by Nucleotide ID:ENST00000359246Re-query CCDS DB by Protein ID:ENSP00000352185
Original member Current member NCBI NM_005392.4 NP_005383.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005392.4Link to Protein Sequence:NP_005383.3Re-query CCDS DB by Nucleotide ID:NM_005392Re-query CCDS DB by Protein ID:NP_005383Link to BLAST:NP_005383.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005383.3 1096 O75151 1096 100% 0 0

Chromosomal Locations for CCDS 35069.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 93576774 93576871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93629970 93630055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93636411 93636525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93645629 93645789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93649071 93649212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93653179 93653365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93654413 93654575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93655934 93656021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93656489 93656595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93658145 93658236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93659511 93659600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93660192 93660560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93662907 93663026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93663517 93663635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93665686 93665864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93665990 93666060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93667080 93667240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93673585 93673862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93674927 93675022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93675680 93675789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93676594 93676963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 93677588 93677676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3291 nt):
ATGGCGACGGTGCCCGTGTACTGCGTCTGCCGGCTCCCCTACGACGTTACCCGCTTCATGATCGAGTGCG
AC
GCCTGCAAGGACTGGTTCCACGGCAGCTGTGTTGGGGTGGAAGAGGAGGAGGCGCCCGACATCGACAT
A
TACCACTGCCCAAACTGTGAGAAAACCCATGGGAAGTCCACCTTAAAGAAGAAGCGGACCTGGCACAAA
CAC
GGCCCGGGGCAAGCGCCTGACGTCAAGCCCGTGCAGAATGGCAGCCAGCTCTTCATCAAGGAGCTGC
GG
AGCCGGACCTTTCCCAGTGCTGAAGACGTGGTGGCCCGTGTGCCAGGAAGTCAGCTCACGCTGGGCTA
C
ATGGAGGAGCACGGCTTCACCGAGCCCATCCTCGTCCCTAAGAAAGACGGGCTGGGTCTGGCTGTCCCG
GCC
CCCACGTTCTATGTCAGTGACGTCGAGAACTACGTGGGGCCGGAACGGAGTGTGGATGTGACAGATG
TC
ACCAAGCAGAAGGACTGCAAGATGAAGCTGAAGGAGTTTGTGGACTATTACTACAGCACCAACCGCAA
G
CGGGTCCTCAACGTCACCAACCTCGAGTTCTCTGACACCCGAATGTCCAGCTTCGTGGAGCCACCTGAC
ATT
GTAAAGAAACTGTCATGGGTAGAAAACTACTGGCCAGATGATGCATTGCTGGCCAAGCCCAAAGTGA
CC
AAGTACTGCCTAATCTGCGTGAAGGACAGTTACACCGACTTCCACATCGACTCTGGGGGCGCCTCTGC
C
TGGTACCACGTGCTCAAGGGGGAGAAGACCTTCTATCTCATCAGGCCGGCCTCGGCCAACATCTCCCTG
TAT
GAGCGCTGGCGGTCTGCCTCTAACCACAGCGAGATGTTCTTTGCTGACCAGGTCGACAAATGCTACA
AG
TGCATCGTCAAGCAGGGCCAGACCCTCTTCATCCCCTCAGGCTGGATCTACGCCACACTCACCCCTGT
G
GACTGCCTGGCCTTCGCGGGACATTTCCTCCACAGCCTGAGTGTGGAGATGCAGATGAGAGCATATGAA
GTG
GAAAGGAGGTTGAAACTGGGCAGCCTGACTCAGTTTCCCAACTTTGAAACTGCGTGCTGGTACATGG
GG
AAGCACCTGCTGGAGGCATTCAAAGGCTCTCACAAATCTGGGAAGCAGCTGCCCCCTCATCTAGTCCA
A
GGAGCTAAAATTCTCAATGGTGCTTTCCGATCGTGGACGAAGAAGCAGGCTTTGGCAGAGCATGAGGAC
GAG
CTCCCGGAGCACTTCAAACCTTCACAGCTAATCAAAGACCTGGCCAAAGAGATCCGGCTCAGTGAGA
AT
GCCTCCAAAGCCGTCCGACCGGAAGTGAATACTGTCGCCTCGTCAGATGAGGTGTGTGACGGGGACCG
G
GAGAAGGAGGAGCCCCCGTCTCCCATTGAGGCCACCCCGCCTCAATCCCTCCTGGAGAAAGTGTCCAAA
AAA
AAGACTCCCAAAACTGTGAAGATGCCCAAGCCATCCAAAATCCCCAAGCCCCCGAAGCCCCCTAAGC
CC
CCAAGGCCCCCCAAAACGCTGAAGCTCAAAGATGGAGGCAAGAAGAAAGGGAAGAAGTCCCGGGAGTC
A
GCCTCACCCACCATCCCCAACCTGGACCTGCTCGAAGCCCACACCAAGGAGGCACTGACCAAGATGGAG
CCG
CCCAAGAAGGGCAAGGCCACAAAGAGTGTCCTGAGTGTGCCCAACAAAGATGTGGTTCACATGCAGA
AT
GATGTGGAGAGGCTGGAAATTCGAGAGCAAACCAAGAGCAAGTCAGAGGCCAAGTGGAAGTACAAGAA
C
AGCAAACCTGACTCCTTACTGAAGATGGAAGAGGAGCAGAAGCTAGAGAAGTCGCCTCTAGCTGGAAAC
AAA
GACAATAAGTTCTCTTTTTCTTTCTCCAACAAGAAACTCCTCGGCTCCAAGGCTCTCAGGCCCCCGA
CG
AGCCCTGGTGTGTTCGGGGCCTTGCAGAACTTCAAGGAGGACAAGCCCAAGCCCGTGCGGGATGAGTA
T
GAGTACGTGTCGGATGACGGTGAGCTCAAGATCGACGAGTTTCCCATCAGGAGGAAGAAAAACGCCCCG
AAA
AGGGACTTGTCCTTCTTGTTGGATAAGAAGGCTGTGCTGCCCACGCCTGTCACGAAGCCAAAGCTGG
AC
TCGGCAGCGTACAAGAGTGATGACTCCTCGGACGAGGGTTCGCTGCACATCGACACAGACACCAAGCC
C
GGCCGCAATGCCAGAGTCAAGAAGGAGAGTGGGAGCTCGGCAGCTGGCATCTTGGACCTGCTGCAGGCC
AGT
GAGGAGGTTGGCGCGCTGGAGTACAACCCCAGCAGCCAGCCCCCGGCCTCCCCCAGCACACAGGAAG
CC
ATTCAGGGAATGCTGTCCATGGCCAACCTGCAGGCCTCCGACTCCTGCCTGCAGACCACGTGGGGAGC
T
GGCCAGGCCAAGGGGAGCTCGCTGGCTGCCCATGGTGCCCGGAAGAATGGGGGTGGCAGTGGCAAGAGT
GCA
GGCAAACGACTGCTGAAGAGGGCTGCCAAGAACAGTGTCGACCTGGACGACTACGAGGAAGAGCAGG
AC
CACCTGGATGCCTGCTTCAAGGACTCAGACTACGTTTACCCCTCACTGGAGTCAGATGAAGACAACCC
C
ATCTTTAAGTCCCGGTCGAAGAAAAGGAAAGGCTCAGACGACGCTCCCTACAGCCCAACAGCAAGGGTC
GGC
CCATCGGTGCCAAGACAGGACAGGCCTGTGCGTGAGGGTACACGGGTGGCTTCCATCGAGACCGGGC
TG
GCGGCTGCTGCAGCTAAGTTGTCCCAGCAGGAGGAGCAGAAAAGCAAGAAAAAAAAGAGTGCCAAGAG
G
AAGCTGACTCCTAACACCACCTCCCCTTCCACCTCCACCTCCATCTCTGCCGGCACCACCTCCACCTCC
ACC
ACGCCAGCCTCTACCACCCCGGCCTCCACCACCCCGGCCTCCACCAGCACGGCCAGCAGCCAGGCCT
CG
CAGGAGGGCAGCTCGCCAGAGCCCCCGCCTGAGTCGCATAGCAGCAGCCTGGCGGACCATGAGTACAC
A
GCCGCTGGCACCTTCACCGGGGCCCAGGCTGGCCGCACCTCCCAGCCCATGGCCCCTGGGGTCTTTCTC
ACA
CAGAGGCGGCCCTCCGCATCGTCTCCAAACAACAACACCGCTGCCAAAGGAAAACGTACGAAAAAGG
GC
ATGGCGACCGCCAAGCAGAGGCTTGGGAAAATTTTGAAAATTCATCGGAACGGGAAACTACTCCTTTA
A


Translation (1096 aa):
MATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKKKRTWHK
H
GPGQAPDVKPVQNGSQLFIKELRSRTFP
SAEDVVARVPGSQLTLGYMEEHGFTEPILVPKKDGLGLAVP
A
PTFYVSDVENYV
GPERSVDVTDVTKQKDCKMKLKEFVDYYYSTNRKRVLNVTNLEFSDTRMSSFVEPPD
I
VKKLSWVENYWPDDALLAKPKVTKYCLICVKDSYTDFHIDSGGASAWYHVLK
GEKTFYLIRPASANISL
Y
ERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPS
GWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYE
V
ERRLKLGSLTQFPNFETACWYMGKHLLEAFK
GSHKSGKQLPPHLVQGAKILNGAFRSWTKKQALAEHED
E
LPEHFKPSQLIKDLAKEIRLSE
NASKAVRPEVNTVASSDEVCDGDREKEEPPSPIEATPPQSLLEKVSK
K
KTPKTVKMPKPSKIPKPPKPPKPPRPPKTLKLKDGGKKKGKKSRESASPTIPNLDLLEAHTKEALTKME
P
PKKGK
ATKSVLSVPNKDVVHMQNDVERLEIREQTKSKSEAKWKYKNSKPDSLLKMEEEQKLEKSPLAGN
K
DNKFSFSFSNKKLL
GSKALRPPTSPGVFGALQNFKEDKPKPVRDEYEYVSDDGELKIDEFPIRRKKNAP
K
RDLS
FLLDKKAVLPTPVTKPKLDSAAYKSDDSSDEGSLHIDTDTKPGRNARVKKESGSSAAGILDLLQA
S
EEVGALEYNPS
SQPPASPSTQEAIQGMLSMANLQASDSCLQTTWGAGQAKGSSLAAHGARKNGGGSGKS
A
GKRLLKRAAKNSVDLDDYEEEQDHLDACFKDSDY
VYPSLESDEDNPIFKSRSKKRKGSDDAPYSPTARV
G
PSVPRQDRPVREGTRVASIETGLAAAAAKLSQQ
EEQKSKKKKSAKRKLTPNTTSPSTSTSISAGTTSTS
T
TPASTTPASTTPASTSTASSQASQEGSSPEPPPESHSSSLADHEYTAAGTFTGAQAGRTSQPMAPGVFL
T
QRRPSASSPNNNTAAK
GKRTKKGMATAKQRLGKILKIHRNGKLLL



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser