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Report for CCDS11965.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
11965.1 |
Public |
Homo sapiens |
18 |
ATP8B1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:5205](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:11965.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 18 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 11965.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000648908.2 |
ENSP00000497896.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000648908.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000497896.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000648908](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000497896](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001374385.1 |
NP_001361314.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001374385.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001361314.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001374385](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001361314](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001361314.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_005603.6 |
NP_005594.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_005603.6](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_005594.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_005603](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_005594](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_005594.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 11965.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3756 nt): ATGAGTACAGAAAGAGACTCAGAAACGACATTTGACGAGGATTCTCAGCCTAATGACGAAGTGGTTCCCT ACAGTGATGATGAAACAGAAGATGAACTTGATGACCAGGGGTCTGCTGTTGAACCAGAACAAAACCGAGT CAACAGGGAAGCAGAGGAGAACCGGGAGCCATTCAGAAAAGAATGTACATGGCAAGTCAAAGCAAACGAT CGCAAGTACCACGAACAACCTCACTTTATGAACACAAAATTCTTGTGTATTAAGGAGAGTAAATATGCGA ATAATGCAATTAAAACATACAAGTACAACGCATTTACCTTTATACCAATGAATCTGTTTGAGCAGTTTAA GAGAGCAGCCAATTTATATTTCCTGGCTCTTCTTATCTTACAGGCAGTTCCTCAAATCTCTACCCTGGCT TGGTACACCACACTAGTGCCCCTGCTTGTGGTGCTGGGCGTCACTGCAATCAAAGACCTGGTGGACGATG TGGCTCGCCATAAAATGGATAAGGAAATCAACAATAGGACGTGTGAAGTCATTAAGGATGGCAGGTTCAA AGTTGCTAAGTGGAAAGAAATTCAAGTTGGAGACGTCATTCGTCTGAAAAAAAATGATTTTGTTCCAGCT GACATTCTCCTGCTGTCTAGCTCTGAGCCTAACAGCCTCTGCTATGTGGAAACAGCAGAACTGGATGGAG AAACCAATTTAAAATTTAAGATGTCACTTGAAATCACAGACCAGTACCTCCAAAGAGAAGATACATTGGC TACATTTGATGGTTTTATTGAATGTGAAGAACCCAATAACAGACTAGATAAGTTTACAGGAACACTATTT TGGAGAAACACAAGTTTTCCTTTGGATGCTGATAAAATTTTGTTACGTGGCTGTGTAATTAGGAACACCG ATTTCTGCCACGGCTTAGTCATTTTTGCAGGTGCTGACACTAAAATAATGAAGAATAGTGGGAAAACCAG ATTTAAAAGAACTAAAATTGATTACTTGATGAACTACATGGTTTACACGATCTTTGTTGTTCTTATTCTG CTTTCTGCTGGTCTTGCCATCGGCCATGCTTATTGGGAAGCACAGGTGGGCAATTCCTCTTGGTACCTCT ATGATGGAGAAGACGATACACCCTCCTACCGTGGATTCCTCATTTTCTGGGGCTATATCATTGTTCTCAA CACCATGGTACCCATCTCTCTCTATGTCAGCGTGGAAGTGATTCGTCTTGGACAGAGTCACTTCATCAAC TGGGACCTGCAAATGTACTATGCTGAGAAGGACACACCCGCAAAAGCTAGAACCACCACACTCAATGAAC AGCTCGGGCAGATCCATTATATCTTCTCTGATAAGACGGGGACACTCACACAAAATATCATGACCTTTAA AAAGTGCTGTATCAACGGGCAGATATATGGGGACCATCGGGATGCCTCTCAACACAACCACAACAAAATA GAGCAAGTTGATTTTAGCTGGAATACATATGCTGATGGGAAGCTTGCATTTTATGACCACTATCTTATTG AGCAAATCCAGTCAGGGAAAGAGCCAGAAGTACGACAGTTCTTCTTCTTGCTCGCAGTTTGCCACACAGT CATGGTGGATAGGACTGATGGTCAGCTCAACTACCAGGCAGCCTCTCCCGATGAAGGTGCCCTGGTAAAC GCTGCCAGGAACTTTGGCTTTGCCTTCCTCGCCAGGACCCAGAACACCATCACCATCAGTGAACTGGGCA CTGAAAGGACTTACAATGTTCTTGCCATTTTGGACTTCAACAGTGACCGGAAGCGAATGTCTATCATTGT AAGAACCCCAGAAGGCAATATCAAGCTTTACTGTAAAGGTGCTGACACTGTTATTTATGAACGGTTACAT CGAATGAATCCTACTAAGCAAGAAACACAGGATGCCCTGGATATCTTTGCAAATGAAACTCTTAGAACCC TATGCCTTTGCTACAAGGAAATTGAAGAAAAAGAATTTACAGAATGGAATAAAAAGTTTATGGCTGCCAG TGTGGCCTCCACCAACCGGGACGAAGCTCTGGATAAAGTATATGAGGAGATTGAAAAAGACTTAATTCTC CTGGGAGCTACAGCTATTGAAGACAAGCTACAGGATGGAGTTCCAGAAACCATTTCAAAACTTGCAAAAG CTGACATTAAGATCTGGGTGCTTACTGGAGACAAAAAGGAAACTGCTGAAAATATAGGATTTGCTTGTGA ACTTCTGACTGAAGACACCACCATCTGCTATGGGGAGGATATTAATTCTCTTCTTCATGCAAGGATGGAA AACCAGAGGAATAGAGGTGGCGTCTACGCAAAGTTTGCACCTCCTGTGCAGGAATCTTTTTTTCCACCCG GTGGAAACCGTGCCTTAATCATCACTGGTTCTTGGTTGAATGAAATTCTTCTCGAGAAAAAGACCAAGAG AAATAAGATTCTGAAGCTGAAGTTCCCAAGAACAGAAGAAGAAAGACGGATGCGGACCCAAAGTAAAAGG AGGCTAGAAGCTAAGAAAGAGCAGCGGCAGAAAAACTTTGTGGACCTGGCCTGCGAGTGCAGCGCAGTCA TCTGCTGCCGCGTCACCCCCAAGCAGAAGGCCATGGTGGTGGACCTGGTGAAGAGGTACAAGAAAGCCAT CACGCTGGCCATCGGAGATGGGGCCAATGACGTGAACATGATCAAAACTGCCCACATTGGCGTTGGAATA AGTGGACAAGAAGGAATGCAAGCTGTCATGTCGAGTGACTATTCCTTTGCTCAGTTCCGATATCTGCAGA GGCTACTGCTGGTGCATGGCCGATGGTCTTACATAAGGATGTGCAAGTTCCTACGATACTTCTTTTACAA AAACTTTGCCTTTACTTTGGTTCATTTCTGGTACTCCTTCTTCAATGGCTACTCTGCGCAGACTGCATAC GAGGATTGGTTCATCACCCTCTACAACGTGCTGTACACCAGCCTGCCCGTGCTCCTCATGGGGCTGCTCG ACCAGGATGTGAGTGACAAACTGAGCCTCCGATTCCCTGGGTTATACATAGTGGGACAAAGAGACTTACT ATTCAACTATAAGAGATTCTTTGTAAGCTTGTTGCATGGGGTCCTAACATCGATGATCCTCTTCTTCATA CCTCTTGGAGCTTATCTGCAAACCGTAGGGCAGGATGGAGAGGCACCTTCCGACTACCAGTCTTTTGCCG TCACCATTGCCTCTGCTCTTGTAATAACAGTCAATTTCCAGATTGGCTTGGATACTTCTTATTGGACTTT TGTGAATGCTTTTTCAATTTTTGGAAGCATTGCACTTTATTTTGGCATCATGTTTGACTTTCATAGTGCT GGAATACATGTTCTCTTTCCATCTGCATTTCAATTTACAGGCACAGCTTCAAACGCTCTGAGACAGCCAT ACATTTGGTTAACTATCATCCTGGCTGTTGCTGTGTGCTTACTACCCGTCGTTGCCATTCGATTCCTGTC AATGACCATCTGGCCATCAGAAAGTGATAAGATCCAGAAGCATCGCAAGCGGTTGAAGGCGGAGGAGCAG TGGCAGCGACGGCAGCAGGTGTTCCGCCGGGGCGTGTCAACGCGGCGCTCGGCCTACGCCTTCTCGCACC AGCGGGGCTACGCGGACCTCATCTCCTCCGGGCGCAGCATCCGCAAGAAGCGCTCGCCGCTTGATGCCAT CGTGGCGGATGGCACCGCGGAGTACAGGCGCACCGGGGACAGCTGA
Translation (1251 aa): MSTERDSETTFDEDSQPNDEVVPYSDDETEDELDDQGSAVEPEQNRVNREAEENREPFRKECTWQVKAND RKYHEQPHFMNTKFLCIKESKYANNAIKTYKYNAFTFIPMNLFEQFKRAANLYFLALLILQAVPQISTLA WYTTLVPLLVVLGVTAIKDLVDDVARHKMDKEINNRTCEVIKDGRFKVAKWKEIQVGDVIRLKKNDFVPA DILLLSSSEPNSLCYVETAELDGETNLKFKMSLEITDQYLQREDTLATFDGFIECEEPNNRLDKFTGTLF WRNTSFPLDADKILLRGCVIRNTDFCHGLVIFAGADTKIMKNSGKTRFKRTKIDYLMNYMVYTIFVVLIL LSAGLAIGHAYWEAQVGNSSWYLYDGEDDTPSYRGFLIFWGYIIVLNTMVPISLYVSVEVIRLGQSHFIN WDLQMYYAEKDTPAKARTTTLNEQLGQIHYIFSDKTGTLTQNIMTFKKCCINGQIYGDHRDASQHNHNKI EQVDFSWNTYADGKLAFYDHYLIEQIQSGKEPEVRQFFFLLAVCHTVMVDRTDGQLNYQAASPDEGALVN AARNFGFAFLARTQNTITISELGTERTYNVLAILDFNSDRKRMSIIVRTPEGNIKLYCKGADTVIYERLH RMNPTKQETQDALDIFANETLRTLCLCYKEIEEKEFTEWNKKFMAASVASTNRDEALDKVYEEIEKDLIL LGATAIEDKLQDGVPETISKLAKADIKIWVLTGDKKETAENIGFACELLTEDTTICYGEDINSLLHARME NQRNRGGVYAKFAPPVQESFFPPGGNRALIITGSWLNEILLEKKTKRNKILKLKFPRTEEERRMRTQSKR RLEAKKEQRQKNFVDLACECSAVICCRVTPKQKAMVVDLVKRYKKAITLAIGDGANDVNMIKTAHIGVGI SGQEGMQAVMSSDYSFAQFRYLQRLLLVHGRWSYIRMCKFLRYFFYKNFAFTLVHFWYSFFNGYSAQTAY EDWFITLYNVLYTSLPVLLMGLLDQDVSDKLSLRFPGLYIVGQRDLLFNYKRFFVSLLHGVLTSMILFFI PLGAYLQTVGQDGEAPSDYQSFAVTIASALVITVNFQIGLDTSYWTFVNAFSIFGSIALYFGIMFDFHSA GIHVLFPSAFQFTGTASNALRQPYIWLTIILAVAVCLLPVVAIRFLSMTIWPSESDKIQKHRKRLKAEEQ WQRRQQVFRRGVSTRRSAYAFSHQRGYADLISSGRSIRKKRSPLDAIVADGTAEYRRTGDS
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