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Report for CCDS5317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5317.1 Public Homo sapiens 7 GET4 24 110 108 CCDS HistoryNCBI Gene:51608Re-query CCDS DB by CCDS ID:5317.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5317.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265857.8 ENSP00000265857.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265857.8Link to Ensembl Protein Viewer:ENSP00000265857.3Re-query CCDS DB by Nucleotide ID:ENST00000265857Re-query CCDS DB by Protein ID:ENSP00000265857
Original member Current member NCBI NM_015949.3 NP_057033.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015949.3Link to Protein Sequence:NP_057033.2Re-query CCDS DB by Nucleotide ID:NM_015949Re-query CCDS DB by Protein ID:NP_057033Link to BLAST:NP_057033.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057033.2 327 Q7L5D6-1 327 100% 0 0

Chromosomal Locations for CCDS 5317.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 876646 876800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 886056 886134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 886569 886650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 887370 887519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 890928 891066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 892278 892418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 893740 893815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 893899 893971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 895334 895422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGCGGCGGCGGCGGCGATGGCCGAGCAGGAGAGCGCCCGGAACGGCGGCCGCAACCGCGGCGGCGTCC
AGCGTGTGGAGGGCAAGCTGCGCGCCAGCGTCGAGAAGGGCGACTACTACGAGGCGCACCAGATGTACCG
GACCCTGTTCTTCAGGTACATGTCCCAGAGCAAGCACACGGAGGCCCGGGAGCTCATGTACTCGGGAGCC
CTGCTCTTCTTCAGCCATGGCCAGCAAAACAGTGCAGCAGACTTGTCCATGCTGGTCCTGGAGTCCCTGG
AGAAGGCGGAAGTGGAGGTGGCTGACGAGCTGCTGGAAAATCTGGCTAAAGTGTTCAGCCTGATGGACCC
CAACTCTCCTGAGCGCGTGACCTTTGTGTCCAGAGCCCTGAAGTGGTCCAGTGGGGGCTCCGGGAAGCTG
GGCCACCCCCGGCTGCACCAGCTGCTGGCCCTCACCCTGTGGAAAGAACAAAACTATTGTGAGTCGAGGT
ATCATTTTCTGCACTCAGCGGACGGGGAGGGCTGTGCCAACATGCTGGTGGAGTATTCCACGTCCCGCGG
CTTCCGCAGCGAGGTGGACATGTTCGTGGCCCAGGCCGTGCTACAGTTTCTCTGTTTAAAAAACAAAAGT
AGCGCATCGGTGGTCTTCACGACGTACACCCAGAAGCACCCGTCCATCGAGGACGGGCCTCCGTTTGTGG
AGCCGCTGCTTAACTTCATCTGGTTCCTGCTGCTGGCTGTGGACGGTGGGAAGCTGACGGTGTTCACTGT
GCTGTGTGAGCAGTACCAGCCATCCCTCCGGCGGGACCCCATGTACAACGAGTACCTCGACCGCATAGGA
CAGCTGTTCTTCGGCGTCCCGCCCAAGCAGACGTCTTCCTACGGGGGCCTGCTCGGGAACCTTCTGACCA
GCCTCATGGGCTCCTCAGAGCAGGAGGATGGGGAGGAGAGCCCCAGCGACGGCAGCCCCATCGAGCTGGA
CTGA

Translation (327 aa):
MAAAAAMAEQESARNGGRNRGGVQRVEGKLRASVEKGDYYEAHQMYRTLFFRYMSQSKHTEARELMYSGA
LLFFSHGQQNSAADLSMLVLESLEKAEVEVADELLENLAKVFSLMDPNSPERVTFVSRALKWSSGGSGKL
GHPRLHQLLALTLWKEQNYCESRYHFLHSADGEGCANMLVEYSTSRGFRSEVDMFVAQAVLQFLCLKNKS
SASVVFTTYTQKHPSIEDGPPFVEPLLNFIWFLLLAVDGGKLTVFTVLCEQYQPSLRRDPMYNEYLDRIG
QLFFGVPPKQTSSYGGLLGNLLTSLMGSSEQEDGEESPSDGSPIELD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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