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Report for CCDS13473.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13473.3 Public Homo sapiens 20 NELFCD 24 110 108 CCDS HistoryNCBI Gene:51497Re-query CCDS DB by CCDS ID:13473.3See the combined annotation on chromosome 20 in Sequence Viewer

Public Note for CCDS 13473.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 13473.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000652272.2 ENSP00000499018.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000652272.2Link to Ensembl Protein Viewer:ENSP00000499018.1Re-query CCDS DB by Nucleotide ID:ENST00000652272Re-query CCDS DB by Protein ID:ENSP00000499018
Original member Current member NCBI NM_198976.4 NP_945327.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198976.4Link to Protein Sequence:NP_945327.3Re-query CCDS DB by Nucleotide ID:NM_198976Re-query CCDS DB by Protein ID:NP_945327Link to BLAST:NP_945327.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945327.3 581 Q8IXH7-4 581 100% 0 0

Chromosomal Locations for CCDS 13473.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 58981310 58981369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58986093 58986208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58986754 58986863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58987708 58987817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58988914 58989021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58989488 58989640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58989858 58989988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58990910 58991075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58991312 58991446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58991881 58992020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58992998 58993112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58993449 58993544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58993624 58993764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58994110 58994239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 58994642 58994676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGACGAGGACTACTACGGGAGCGCGGCCGAGTGGGGCGACGAGGCTGACGGCGGCCAGCAGGAGGATG
ATTCTGGAGAAGGAGAGGATGATGCGGAGGTTCAGCAAGAATGCCTGCATAAATTTTCCACCCGGGATTA
TATCATGGAACCCTCCATCTTCAACACTCTGAAGAGGTATTTTCAGGCAGGAGGGTCTCCAGAGAATGTT
ATCCAGCTCTTATCTGAAAACTACACCGCTGTGGCCCAGACTGTGAACCTGCTGGCCGAGTGGCTCATTC
AGACAGGTGTTGAGCCAGTGCAGGTTCAGGAAACTGTGGAAAATCACTTGAAGAGTTTGCTGATCAAACA
TTTTGACCCCCGCAAAGCAGATTCTATTTTTACTGAAGAAGGAGAGACCCCAGCGTGGCTGGAACAGATG
ATTGCACATACCACGTGGCGGGACCTTTTTTATAAACTGGCTGAAGCCCATCCAGACTGTTTGATGCTGA
ACTTCACCGTTAAGCTTATTTCTGACGCAGGGTACCAGGGGGAGATCACCAGTGTGTCCACAGCATGCCA
GCAGCTAGAAGTGTTCTCGAGAGTGCTCCGGACCTCTCTAGCTACAATTTTAGATGGAGGAGAAGAAAAC
CTTGAAAAAAATCTCCCTGAGTTTGCCAAGATGGTGTGCCACGGGGAGCACACGTACCTGTTTGCCCAGG
CCATGATGTCCGTGCTGGCCCAGGAGGAGCAGGGGGGCTCCGCTGTGCGCAGGATCGCCCAGGAAGTGCA
GCGCTTTGCCCAGGAGAAAGGTCATGACGCCAGTCAGATCACACTAGCCTTGGGCACAGCTGCCTCCTAC
CCCAGGGCCTGCCAGGCTCTCGGGGCCATGCTGTCCAAAGGAGCCCTGAACCCTGCTGACATCACCGTCC
TGTTCAAGATGTTCACAAGCATGGACCCTCCTCCGGTTGAACTTATCCGCGTTCCAGCCTTCCTGGACCT
GTTCATGCAGTCACTCTTTAAACCAGGGGCTCGGATCAACCAGGACCACAAGCACAAATACATCCACATC
TTGGCGTACGCAGCAAGCGTGGTTGAGACCTGGAAGAAGAACAAGCGAGTGAGCATCAATAAAGATGAGC
TGAAGTCAACGTCAAAAGCTGTCGAAACCGTTCACAATTTGTGTTGCAACGAGAACAAAGGGGCCTCTGA
ACTAGTGGCAGAATTGAGCACACTTTATCAGTGTATTAGGTTTCCAGTGGTAGCAATGGGTGTGCTGAAG
TGGGTGGATTGGACTGTATCAGAACCAAGGTACTTTCAGCTGCAGACTGACCATACCCCTGTCCACCTGG
CGTTGCTGGATGAGATCAGCACCTGCCACCAGCTCCTGCACCCCCAGGTCCTGCAGCTGCTTGTTAAGCT
TTTTGAGACTGAGCACTCCCAGCTGGACGTGATGGAGCAGCTTGAGTTGAAGAAGACACTGCTGGACAGG
ATGGTTCACCTGCTGAGTCGAGGTTATGTACTTCCTGTTGTCAGTTACATCCGAAAGTGTCTGGAGAAGC
TGGACACTGACATTTCACTCATTCGCTATTTTGTCACTGAGGTGCTGGACGTCATTGCTCCTCCTTATAC
CTCTGACTTCGTGCAACTTTTCCTCCCCATCCTGGAGAATGACAGCATCGCAGGTACCATCAAAACGGAA
GGCGAGCATGACCCTGTGACGGAGTTTATAGCTCACTGCAAATCTAACTTCATCATGGTGAACTAA

Translation (581 aa):
MDEDYYGSAAEWGDEADGGQQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKRYFQAGGSPENV
IQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFDPRKADSIFTEEGETPAWLEQM
IAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEITSVSTACQQLEVFSRVLRTSLATILDGGEEN
LEKNLPEFAKMVCHGEHTYLFAQAMMSVLAQEEQGGSAVRRIAQEVQRFAQEKGHDASQITLALGTAASY
PRACQALGAMLSKGALNPADITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGARINQDHKHKYIHI
LAYAASVVETWKKNKRVSINKDELKSTSKAVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLK
WVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDR
MVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKTE
GEHDPVTEFIAHCKSNFIMVN


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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