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Report for CCDS5081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5081.1 Public Homo sapiens 6 CDC40 24 110 108 CCDS HistoryNCBI Gene:51362Re-query CCDS DB by CCDS ID:5081.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5081.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307731.2 ENSP00000304370.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307731.2Link to Ensembl Protein Viewer:ENSP00000304370.1Re-query CCDS DB by Nucleotide ID:ENST00000307731Re-query CCDS DB by Protein ID:ENSP00000304370
Original member Current member EBI ENST00000368932.5 ENSP00000357928.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368932.5Link to Ensembl Protein Viewer:ENSP00000357928.1Re-query CCDS DB by Nucleotide ID:ENST00000368932Re-query CCDS DB by Protein ID:ENSP00000357928
Original member Current member NCBI NM_015891.3 NP_056975.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015891.3Link to Protein Sequence:NP_056975.1Re-query CCDS DB by Nucleotide ID:NM_015891Re-query CCDS DB by Protein ID:NP_056975Link to BLAST:NP_056975.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056975.1 579 O60508 579 100% 0 0

Chromosomal Locations for CCDS 5081.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 110180445 110180633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110193182 110193268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110201558 110201687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110207506 110207589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110209084 110209223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110210707 110210803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110212133 110212272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110213086 110213160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110215286 110215331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110217702 110217803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110219364 110219479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110219736 110219869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110226167 110226243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110228832 110228976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 110229954 110230131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGTCGGCTGCGATTGCAGCTCTGGCCGCTTCCTATGGTTCGGGTTCAGGGTCCGAATCGGACTCGGACA
GTGAGAGCAGTCGGTGTCCGCTGCCAGCCGCCGACTCCCTCATGCACTTGACTAAATCGCCTTCATCAAA
GCCGTCTCTAGCAGTGGCAGTGGACTCGGCTCCGGAGGTGGCAGTTAAGGAAGATTTGGAGACTGGAGTT
CACCTTGACCCTGCCGTCAAAGAAGTTCAGTATAATCCTACCTATGAGACCATGTTTGCTCCTGAGTTTG
GACCAGAAAATCCCTTTAGGACACAGCAAATGGCTGCCCCTAGAAATATGCTTTCTGGATATGCCGAACC
AGCTCATATCAATGATTTCATGTTTGAGCAGCAAAGGAGAACTTTTGCAACATATGGTTATGCATTAGAC
CCTTCATTAGATAATCATCAAGTGTCTGCTAAATATATTGGTTCTGTAGAAGAAGCTGAAAAAAATCAAG
GTTTAACTGTATTTGAAACTGGTCAGAAGAAAACAGAAAAGAGGAAAAAGTTTAAAGAAAATGATGCATC
CAATATTGATGGTTTTTTGGGACCATGGGCAAAATATGTGGATGAAAAAGATGTAGCCAAACCTTCAGAA
GAAGAGCAAAAAGAATTGGATGAAATCACAGCAAAGAGGCAGAAAAAAGGAAAACAGGAAGAAGAGAAAC
CTGGGGAGGAGAAGACAATCTTACATGTTAAAGAAATGTATGACTATCAAGGCAGGTCCTATCTTCACAT
ACCTCAGGATGTTGGTGTTAATCTACGGTCAACTATGCCACCTGAGAAGTGTTATCTTCCCAAAAAACAA
ATTCATGTGTGGTCTGGACACACAAAGGGCGTCAGTGCAGTCAGATTGTTTCCTCTCTCTGGCCATTTAT
TGCTGTCTTGTTCCATGGACTGTAAAATTAAGCTATGGGAGGTTTATGGAGAACGGCGCTGTCTGAGAAC
ATTTATTGGTCACAGTAAGGCTGTTAGGGATATCTGCTTCAATACTGCAGGAACACAGTTCCTCAGTGCA
GCCTATGACAGGTATCTTAAGCTCTGGGACACTGAGACAGGACAGTGTATATCAAGATTTACAAACCGAA
AAGTACCTTATTGTGTCAAATTCAATCCTGATGAAGATAAGCAAAATCTCTTTGTGGCTGGGATGTCTGA
TAAGAAGATTGTGCAATGGGACATTCGAAGTGGAGAAATTGTGCAGGAATATGATCGGCATTTGGGAGCT
GTCAACACCATTGTTTTTGTGGATGAGAATAGGAGATTTGTGAGCACATCTGATGATAAAAGCCTAAGAG
TTTGGGAATGGGATATCCCTGTGGATTTCAAGTACATAGCAGAACCCAGTATGCACTCAATGCCTGCAGT
GACTTTGTCTCCAAATGGAAAATGGCTAGCATGCCAATCAATGGACAACCAAATCTTAATTTTTGGAGCA
CAGAACAGATTTAGATTAAATAAGAAAAAAATTTTTAAGGGCCATATGGTAGCAGGCTATGCTTGTCAGG
TGGACTTTTCACCAGACATGAGTTATGTGATTTCAGGAGATGGAAATGGAAAATTAAACATTTGGGACTG
GAAGACCACAAAACTCTACAGTCGATTTAAAGCTCATGATAAAGTGTGTATAGGTGCAGTGTGGCATCCT
CATGAAACTTCTAAGGTCATAACATGTGGTTGGGATGGTCTCATTAAATTGTGGGATTAA

Translation (579 aa):
MSAAIAALAASYGSGSGSESDSDSESSRCPLPAADSLMHLTKSPSSKPSLAVAVDSAPEVAVKEDLETGV
HLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHINDFMFEQQRRTFATYGYALD
PSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSE
EEQKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTMPPEKCYLPKKQ
IHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSA
AYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGA
QNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHP
HETSKVITCGWDGLIKLWD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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