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Report for CCDS612.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
612.1 Public Homo sapiens 1 HOOK1 24 110 108 CCDS HistoryNCBI Gene:51361Re-query CCDS DB by CCDS ID:612.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 612.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371208.5 ENSP00000360252.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371208.5Link to Ensembl Protein Viewer:ENSP00000360252.3Re-query CCDS DB by Nucleotide ID:ENST00000371208Re-query CCDS DB by Protein ID:ENSP00000360252
Original member Current member NCBI NM_015888.6 NP_056972.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015888.6Link to Protein Sequence:NP_056972.1Re-query CCDS DB by Nucleotide ID:NM_015888Re-query CCDS DB by Protein ID:NP_056972Link to BLAST:NP_056972.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056972.1 728 Q9UJC3-1 728 100% 0 0

Chromosomal Locations for CCDS 612.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 59815118 59815180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59821858 59821943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59828780 59828852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59832163 59832213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59833405 59833537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59835345 59835412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59836873 59836935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59840308 59840391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59843432 59843598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59847045 59847185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59848315 59848516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59849073 59849183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59858428 59858515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59858985 59859045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59860188 59860328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59862784 59862877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59864632 59864666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59865163 59865245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59865872 59865972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59868250 59868351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59871042 59871110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 59872795 59872965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGGAGGAGACGCAGCCGCCGCCGCAGCCTAAGCTGCCCCTGTGCGACAGCCTCATGATCTGGCTGCAGA
CATTCAATACTGCCTCACCTTGTCAAGATGTCAAACAGCTGACTAGTGGAGTTGCCATGGCACAAGTTCT
TCATCAAATTGATGCAGCTTGGTTTAACGAATCTTGGTTAAGCCGAATTAAAGAGGATGTTGGGGACAAC
TGGAGAATAAAGGCCAGTAATGTAAAGAAGGTCCTTCAAGGAATTATGAGTTATTATCATGAGTTTTTGG
GGCAGCAGATTTCAGAAGCACTTATCCCTGATTTAAACCAAATAACCGAATGTTCAGATCCAGTGGAGCT
TGGGAGGTTGCTCCAGCTTATTTTAGGTTGTGCGATCAACTGTGAAAAGAAGCAAGAACATATTCAAAAT
ATAATGACACTGGAAGAGTCTGTTCAACATGTGGTCATGACTGCTATTCAAGAGTTGATGAGTAAAGAAA
TATTGAGCTCTCCTCCAAATGATGCTGTTGGAGAATTGGAGCAACAGCTTAAAAGAGCCTTGGAAGAACT
TCAGGAAGCACTAGCAGAAAAAGAAGAGCTGAGGCAAAGATGTGAAGAATTGGATATGCAGGTGACTACA
CTTCAAGATGAAAAGAATTCACTGGTTTCTGAAAATGAGATGATGAATGAAAAACTTGACCAGTTGGATG
GCTCTTTTGATGATCCAAACACAGTGGTTGCAAAAAAGTATTTTCATGCACAATTACAACTAGAACAATT
ACAGGAAGAAAACTTCAGGCTTGAAGCTGCAAAAGATGATTACCGTGTTCACTGTGAAGAACTTGAAAAG
CAGCTAATCGAATTCCAGCATAGGAATGATGAATTGACTAGTCTTGCAGAAGAAACAAGAGCCCTGAAAG
ATGAAATAGATGTTCTTAGGGCTACCTCTGATAAAGCAAATAAACTGGAGTCAACAGTTGAGATATATCG
TCAGAAGCTACAAGATCTGAATGACCTTCGCAAGCAGGTGAAAACTTTACAGGAAACCAACATGATGTAT
ATGCATAATACAGTCAGCTTAGAAGAAGAATTAAAAAAAGCAAATGCAGCACGTACACAATTAGAAACAT
ACAAAAGGCAGGTTCAAGATCTTCATGTTAAACTTTCCTCCGAATCCAAGAGGGCAGACACACTAGCGTT
TGAAATGAAGCGGCTTGAAGAAAAACATGAAGCTTTACTTAAGGAAAAAGAGAGACTAATTGAGCAGCGT
GATACTTTGAAAGAAACAAATGAAGAGCTTCGATGTTCACAAGTACAACAGGACCACCTAAACCAAACAG
ATGCATCTGCTACAAAAAGTTATGAGAATCTTGCTGCTGAGATTATGCCAGTGGAATATAGGGAGGTGTT
TATTCGACTGCAACATGAAAATAAGATGCTTCGCTTACAGCAAGAAGGCTCTGAGAATGAACGTATTGAG
GAACTTCAGGAGCAGCTAGAACAGAAACACCGTAAAATGAATGAACTGGAAACTGAGCAGAGGCTGAGCA
AAGAGCGTATTAGAGAATTGCAGCAGCAGATTGAGGACCTCCAGAAATCTTTACAGGAACAAGGTTCCAA
GTCTGAAGGCGAAAGTTCCAGCAAATTAAAGCAGAAGTTGGAAGCTCATATGGAAAAACTCACAGAGGTC
CATGAAGAATTACAGAAGAAACAAGAACTCATTGAAGATCTTCAGCCAGATATAAATCAAAATGTACAAA
AGATCAATGAACTTGAAGCTGCTCTTCAGAAGAAAGATGAAGATATGAAAGCAATGGAGGAAAGATATAA
AATGTACTTGGAGAAAGCCAGAAATGTAATAAAAACTTTGGATCCCAAGTTAAATCCAGCATCAGCTGAA
ATAATGCTACTAAGAAAGCAGTTGGCAGAGAAAGAGAGAAGAATTGAGATTCTGGAGAGTGAATGCAAAG
TAGCAAAATTCCGTGATTATGAAGAAAAACTCATTGTTTCTGCGTGGTATAATAAGAGTCTAGCATTCCA
GAAACTGGGGATGGAATCTAGACTTGTGAGCGGCGGTGGTGCCTGCAGTGACACTGGTGCGTGCACTCCT
GCGCGGTCTTTCTTAGCGCAGCAACGGCACATCACCAACACCAGAAGAAATCTCTCTGTTAAAGTCCCTG
CTACAACATCTGATTAA

Translation (728 aa):
MEETQPPPQPKLPLCDSLMIWLQTFNTASPCQDVKQLTSGVAMAQVLHQIDAAWFNESWLSRIKEDVGDN
WRIKASNVKKVLQGIMSYYHEFLGQQISEALIPDLNQITECSDPVELGRLLQLILGCAINCEKKQEHIQN
IMTLEESVQHVVMTAIQELMSKEILSSPPNDAVGELEQQLKRALEELQEALAEKEELRQRCEELDMQVTT
LQDEKNSLVSENEMMNEKLDQLDGSFDDPNTVVAKKYFHAQLQLEQLQEENFRLEAAKDDYRVHCEELEK
QLIEFQHRNDELTSLAEETRALKDEIDVLRATSDKANKLESTVEIYRQKLQDLNDLRKQVKTLQETNMMY
MHNTVSLEEELKKANAARTQLETYKRQVQDLHVKLSSESKRADTLAFEMKRLEEKHEALLKEKERLIEQR
DTLKETNEELRCSQVQQDHLNQTDASATKSYENLAAEIMPVEYREVFIRLQHENKMLRLQQEGSENERIE
ELQEQLEQKHRKMNELETEQRLSKERIRELQQQIEDLQKSLQEQGSKSEGESSSKLKQKLEAHMEKLTEV
HEELQKKQELIEDLQPDINQNVQKINELEAALQKKDEDMKAMEERYKMYLEKARNVIKTLDPKLNPASAE
IMLLRKQLAEKERRIEILESECKVAKFRDYEEKLIVSAWYNKSLAFQKLGMESRLVSGGGACSDTGACTP
ARSFLAQQRHITNTRRNLSVKVPATTSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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