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Report for CCDS4211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4211.1 Public Homo sapiens 5 PAIP2 24 110 108 CCDS HistoryNCBI Gene:51247Re-query CCDS DB by CCDS ID:4211.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4211.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265192.9 ENSP00000265192.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265192.9Link to Ensembl Protein Viewer:ENSP00000265192.4Re-query CCDS DB by Nucleotide ID:ENST00000265192Re-query CCDS DB by Protein ID:ENSP00000265192
Original member Current member EBI ENST00000394795.6 ENSP00000378275.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394795.6Link to Ensembl Protein Viewer:ENSP00000378275.2Re-query CCDS DB by Nucleotide ID:ENST00000394795Re-query CCDS DB by Protein ID:ENSP00000378275
Original member Current member EBI ENST00000510080.1 ENSP00000422508.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510080.1Link to Ensembl Protein Viewer:ENSP00000422508.1Re-query CCDS DB by Nucleotide ID:ENST00000510080Re-query CCDS DB by Protein ID:ENSP00000422508
Original member Current member NCBI NM_001033112.3 NP_001028284.1 Accepted alive Link to Nucleotide Sequence:NM_001033112.3Link to Protein Sequence:NP_001028284.1Re-query CCDS DB by Nucleotide ID:NM_001033112Re-query CCDS DB by Protein ID:NP_001028284Link to BLAST:NP_001028284.1
Original member Current member NCBI NM_016480.5 NP_057564.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016480.5Link to Protein Sequence:NP_057564.3Re-query CCDS DB by Nucleotide ID:NM_016480Re-query CCDS DB by Protein ID:NP_057564Link to BLAST:NP_057564.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028284.1 127 Q9BPZ3 127 100% 0 0
NP_057564.3 127 Q9BPZ3 127 100% 0 0

Chromosomal Locations for CCDS 4211.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139363785 139363922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139364564 139364743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139368733 139368798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGAAAGATCCAAGTCGCAGCAGTACTAGCCCAAGCATCATCAATGAAGATGTGATTATTAACGGTCATT
CTCATGAAGATGACAATCCATTTGCAGAGTACATGTGGATGGAAAATGAAGAAGAATTCAACAGACAAAT
AGAAGAGGAGTTATGGGAAGAAGAATTTATTGAACGCTGTTTCCAAGAAATGCTGGAAGAGGAAGAAGAG
CATGAATGGTTTATTCCAGCTCGAGATCTCCCACAAACTATGGACCAAATCCAAGACCAGTTTAATGACC
TTGTTATCAGTGATGGCTCTTCTCTGGAAGATCTTGTGGTCAAGAGCAATCTGAATCCAAATGCAAAGGA
GTTTGTTCCTGGGGTGAAGTACGGAAATATTTGA

Translation (127 aa):
MKDPSRSSTSPSIINEDVIINGHSHEDDNPFAEYMWMENEEEFNRQIEEELWEEEFIERCFQEMLEEEEE
HEWFIPARDLPQTMDQIQDQFNDLVISDGSSLEDLVVKSNLNPNAKEFVPGVKYGNI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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