NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33863.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33863.1 Public Homo sapiens 3 DBR1 24 110 108 CCDS HistoryNCBI Gene:51163Re-query CCDS DB by CCDS ID:33863.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33863.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000260803.9 ENSP00000260803.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000260803.9Link to Ensembl Protein Viewer:ENSP00000260803.4Re-query CCDS DB by Nucleotide ID:ENST00000260803Re-query CCDS DB by Protein ID:ENSP00000260803
Original member Current member NCBI NM_016216.4 NP_057300.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016216.4Link to Protein Sequence:NP_057300.2Re-query CCDS DB by Nucleotide ID:NM_016216Re-query CCDS DB by Protein ID:NP_057300Link to BLAST:NP_057300.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057300.2 544 Q9UK59-1 544 100% 0 0

Chromosomal Locations for CCDS 33863.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138161889 138162582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138163349 138163494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138163778 138163858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138167081 138167305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138170107 138170192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138171633 138171713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138173502 138173626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138174599 138174795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1635 nt):
ATGCGGGTGGCTGTGGCTGGCTGCTGCCACGGCGAGCTGGATAAGATCTATGAGACGCTGGCGCTGGCAG
AGCGGCGCGGCCCGGGGCCTGTCGACCTCTTGCTGTGCTGCGGCGACTTCCAGGCGGTGCGCAACGAGGC
GGATCTACGCTGCATGGCCGTGCCGCCCAAGTATCGTCACATGCAAACCTTCTACAGGTATTACTCTGGA
GAGAAAAAGGCTCCAGTTCTCACGCTCTTCATTGGGGGAAACCATGAAGCCTCAAATCATTTGCAAGAGT
TACCCTATGGTGGCTGGGTGGCACCAAACATTTATTATTTAGGTTTGGCTGGTGTGGTAAAATACCGAGG
TGTAAGGATCGGTGGAATCTCTGGTATCTTTAAATCTCATGACTATCGAAAAGGTCATTTTGAGTGCCCC
CCTTATAATTCATCTACAATCAGGAGTATATATCATGTGAGAAATATTGAAGTCTATAAATTAAAACAGC
TGAAGCAGCCTATAGATATATTCTTGTCTCATGATTGGCCAAGAAGTATATATCATTATGGAAATAAGAA
GCAACTTCTTAAGACTAAATCTTTTTTCCGACAAGAAGTGGAAAATAACACATTAGGAAGTCCAGCTGCC
TCAGAGCTTTTAGAGCATCTCAAACCTACTTATTGGTTTTCTGCCCACCTTCATGTGAAGTTTGCCGCCT
TGATGCAGCATCAGGCAAAGGATAAAGGACAGACAGCCAGAGCAACCAAATTTTTAGCCTTGGACAAATG
CTTACCACATAGAGATTTTCTTCAGATATTAGAGATAGAACATGACCCCAGTGCTCCTGATTACTTGGAA
TATGATATTGAATGGCTCACTATTCTCAGGGCTACGGATGATCTTATTAATGTGACTGGGCGCCTGTGGA
ATATGCCAGAAAATAATGGCCTGCATGCAAGGTGGGATTATAGTGCAACAGAAGAAGGTATGAAAGAAGT
ATTGGAAAAATTGAATCATGATCTCAAGGTTCCATGTAACTTTAGTGTAACAGCTGCTTGTTATGATCCT
AGCAAGCCACAGACACAAATGCAGCTGATTCATAGGATCAATCCTCAGACAACTGAATTTTGTGCCCAAC
TTGGCATCATAGACATCAATGTTAGGCTTCAGAAGTCCAAGGAAGAACATCATGTGTGTGGTGAATATGA
AGAACAGGATGATGTGGAGAGTAATGACTCTGGAGAAGACCAGAGTGAATATAATACAGACACATCTGCT
CTGTCTTCTATTAATCCAGATGAAATAATGTTAGATGAAGAAGAAGATGAAGATAGTATTGTAAGTGCAC
ATAGTGGCATGAATACACCATCGGTAGAACCTTCTGATCAAGCTTCTGAGTTTTCTGCAAGTTTCTCTGA
TGTCAGGATCTTGCCAGGCTCTATGATTGTATCTTCTGATGATACGGTGGATTCCACAATTGATAGAGAG
GGGAAACCTGGTGGGACTGTGGAGTCAGGGAATGGAGAGGACTTAACCAAGGTGCCATTGAAGAGGCTGA
GTGATGAACATGAACCTGAACAAAGAAAGAAAATTAAGAGGAGGAATCAAGCCATTTACGCTGCAGTGGA
TGATGATGATGACGATGCAGCTTAA

Translation (544 aa):
MRVAVAGCCHGELDKIYETLALAERRGPGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRHMQTFYRYYSG
EKKAPVLTLFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRIGGISGIFKSHDYRKGHFECP
PYNSSTIRSIYHVRNIEVYKLKQLKQPIDIFLSHDWPRSIYHYGNKKQLLKTKSFFRQEVENNTLGSPAA
SELLEHLKPTYWFSAHLHVKFAALMQHQAKDKGQTARATKFLALDKCLPHRDFLQILEIEHDPSAPDYLE
YDIEWLTILRATDDLINVTGRLWNMPENNGLHARWDYSATEEGMKEVLEKLNHDLKVPCNFSVTAACYDP
SKPQTQMQLIHRINPQTTEFCAQLGIIDINVRLQKSKEEHHVCGEYEEQDDVESNDSGEDQSEYNTDTSA
LSSINPDEIMLDEEEDEDSIVSAHSGMNTPSVEPSDQASEFSASFSDVRILPGSMIVSSDDTVDSTIDRE
GKPGGTVESGNGEDLTKVPLKRLSDEHEPEQRKKIKRRNQAIYAAVDDDDDDAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH