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Report for CCDS12931.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12931.1 Public Homo sapiens 19 ZNF580 24 110 108 CCDS HistoryNCBI Gene:51157Re-query CCDS DB by CCDS ID:12931.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12931.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000325333.10 ENSP00000320050.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000325333.10Link to Ensembl Protein Viewer:ENSP00000320050.4Re-query CCDS DB by Nucleotide ID:ENST00000325333Re-query CCDS DB by Protein ID:ENSP00000320050
Original member Current member EBI ENST00000543039.2 ENSP00000443957.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543039.2Link to Ensembl Protein Viewer:ENSP00000443957.1Re-query CCDS DB by Nucleotide ID:ENST00000543039Re-query CCDS DB by Protein ID:ENSP00000443957
Original member Current member EBI ENST00000545125.1 ENSP00000446126.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545125.1Link to Ensembl Protein Viewer:ENSP00000446126.1Re-query CCDS DB by Nucleotide ID:ENST00000545125Re-query CCDS DB by Protein ID:ENSP00000446126
Original member Current member NCBI NM_001163423.2 NP_001156895.1 Accepted alive Link to Nucleotide Sequence:NM_001163423.2Link to Protein Sequence:NP_001156895.1Re-query CCDS DB by Nucleotide ID:NM_001163423Re-query CCDS DB by Protein ID:NP_001156895Link to BLAST:NP_001156895.1
Original member Current member NCBI NM_016202.2 NP_057286.1 Accepted alive Link to Nucleotide Sequence:NM_016202.2Link to Protein Sequence:NP_057286.1Re-query CCDS DB by Nucleotide ID:NM_016202Re-query CCDS DB by Protein ID:NP_057286Link to BLAST:NP_057286.1
Original member Current member NCBI NM_207115.2 NP_996998.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_207115.2Link to Protein Sequence:NP_996998.1Re-query CCDS DB by Nucleotide ID:NM_207115Re-query CCDS DB by Protein ID:NP_996998Link to BLAST:NP_996998.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156895.1 172 Q9UK33 172 100% 0 0
NP_057286.1 172 Q9UK33 172 100% 0 0
NP_996998.1 172 Q9UK33 172 100% 0 0

Chromosomal Locations for CCDS 12931.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55642509 55643027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGCTGCTGCTGCCGCCGCGGCCACCCCACCCTCGGTCCTCCTCTCCGGAGGCCATGGACCCACCGCCCC
CCAAGGCTCCCCCTTTCCCCAAGGCGGAAGGCCCCTCCTCCACTCCTTCCTCGGCGGCGGGGCCCCGACC
CCCGCGGCTGGGCCGCCACCTCCTCATCGACGCCAATGGGGTCCCCTACACATACACGGTGCAGCTGGAG
GAGGAGCCCCGGGGCCCGCCCCAGCGCGAGGCGCCCCCAGGAGAGCCCGGCCCTCGCAAGGGCTACAGCT
GCCCGGAGTGCGCCCGTGTCTTTGCCAGCCCTCTGCGGCTGCAGAGCCACCGCGTGTCGCACTCGGACCT
CAAGCCCTTCACGTGCGGCGCCTGCGGCAAGGCCTTCAAGCGCTCCAGCCACCTGTCGCGGCATCGCGCC
ACGCACCGCGCCCGCGCCGGGCCGCCGCACACCTGCCCGCTCTGCCCACGCCGCTTCCAGGACGCCGCGG
AGCTGGCGCAGCACGTGCGCCTCCACTAA

Translation (172 aa):
MLLLPPRPPHPRSSSPEAMDPPPPKAPPFPKAEGPSSTPSSAAGPRPPRLGRHLLIDANGVPYTYTVQLE
EEPRGPPQREAPPGEPGPRKGYSCPECARVFASPLRLQSHRVSHSDLKPFTCGACGKAFKRSSHLSRHRA
THRARAGPPHTCPLCPRRFQDAAELAQHVRLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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