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Report for CCDS2862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2862.1 Public Homo sapiens 3 GLT8D1 24 110 108 CCDS HistoryNCBI Gene:55830Re-query CCDS DB by CCDS ID:2862.1Re-query CCDS DB by GeneID:55830See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2862.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266014.11 ENSP00000266014.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266014.11Link to Ensembl Protein Viewer:ENSP00000266014.5Re-query CCDS DB by Nucleotide ID:ENST00000266014Re-query CCDS DB by Protein ID:ENSP00000266014
Original member Current member EBI ENST00000394783.7 ENSP00000378263.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394783.7Link to Ensembl Protein Viewer:ENSP00000378263.3Re-query CCDS DB by Nucleotide ID:ENST00000394783Re-query CCDS DB by Protein ID:ENSP00000378263
Original member Current member EBI ENST00000491606.5 ENSP00000418853.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000491606.5Link to Ensembl Protein Viewer:ENSP00000418853.1Re-query CCDS DB by Nucleotide ID:ENST00000491606Re-query CCDS DB by Protein ID:ENSP00000418853
Original member Current member EBI ENST00000478968.6 ENSP00000419612.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000478968.6Link to Ensembl Protein Viewer:ENSP00000419612.2Re-query CCDS DB by Nucleotide ID:ENST00000478968Re-query CCDS DB by Protein ID:ENSP00000419612
Original member Current member NCBI NM_001010983.3 NP_001010983.1 Accepted alive Link to Nucleotide Sequence:NM_001010983.3Link to Protein Sequence:NP_001010983.1Re-query CCDS DB by Nucleotide ID:NM_001010983Re-query CCDS DB by Protein ID:NP_001010983Link to BLAST:NP_001010983.1
Original member Current member NCBI NM_001278280.2 NP_001265209.1 Accepted alive Link to Nucleotide Sequence:NM_001278280.2Link to Protein Sequence:NP_001265209.1Re-query CCDS DB by Nucleotide ID:NM_001278280Re-query CCDS DB by Protein ID:NP_001265209Link to BLAST:NP_001265209.1
Original member Current member NCBI NM_001278281.2 NP_001265210.1 Accepted alive Link to Nucleotide Sequence:NM_001278281.2Link to Protein Sequence:NP_001265210.1Re-query CCDS DB by Nucleotide ID:NM_001278281Re-query CCDS DB by Protein ID:NP_001265210Link to BLAST:NP_001265210.1
Original member Current member NCBI NM_018446.4 NP_060916.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018446.4Link to Protein Sequence:NP_060916.1Re-query CCDS DB by Nucleotide ID:NM_018446Re-query CCDS DB by Protein ID:NP_060916Link to BLAST:NP_060916.1
Original member Current member NCBI NM_152932.3 NP_690909.1 Accepted alive Link to Nucleotide Sequence:NM_152932.3Link to Protein Sequence:NP_690909.1Re-query CCDS DB by Nucleotide ID:NM_152932Re-query CCDS DB by Protein ID:NP_690909Link to BLAST:NP_690909.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010983.1 371 Q68CQ7-1 371 100% 0 0
NP_001265209.1 371 Q68CQ7-1 371 100% 0 0
NP_001265210.1 371 Q68CQ7-1 371 100% 0 0
NP_060916.1 371 Q68CQ7-1 371 100% 0 0
NP_690909.1 371 Q68CQ7-1 371 100% 0 0

Chromosomal Locations for CCDS 2862.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52694845 52695035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52695190 52695302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52695421 52695587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52695928 52696040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52696234 52696318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52696542 52696659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52697721 52697934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52700262 52700360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52700445 52700460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGTCATTCCGTAAAGTAAACATCATCATCTTGGTCCTGGCTGTTGCTCTCTTCTTACTGGTTTTGCACC
ATAACTTCCTCAGCTTGAGCAGTTTGTTAAGGAATGAGGTTACAGATTCAGGAATTGTAGGGCCTCAACC
TATAGACTTTGTCCCAAATGCTCTCCGACATGCAGTAGATGGGAGACAAGAGGAGATTCCTGTGGTCATC
GCTGCATCTGAAGACAGGCTTGGGGGGGCCATTGCAGCTATAAACAGCATTCAGCACAACACTCGCTCCA
ATGTGATTTTCTACATTGTTACTCTCAACAATACAGCAGACCATCTCCGGTCCTGGCTCAACAGTGATTC
CCTGAAAAGCATCAGATACAAAATTGTCAATTTTGACCCTAAACTTTTGGAAGGAAAAGTAAAGGAGGAT
CCTGACCAGGGGGAATCCATGAAACCTTTAACCTTTGCAAGGTTCTACTTGCCAATTCTGGTTCCCAGCG
CAAAGAAGGCCATATACATGGATGATGATGTAATTGTGCAAGGTGATATTCTTGCCCTTTACAATACAGC
ACTGAAGCCAGGACATGCAGCTGCATTTTCAGAAGATTGTGATTCAGCCTCTACTAAAGTTGTCATCCGT
GGAGCAGGAAACCAGTACAATTACATTGGCTATCTTGACTATAAAAAGGAAAGAATTCGTAAGCTTTCCA
TGAAAGCCAGCACTTGCTCATTTAATCCTGGAGTTTTTGTTGCAAACCTGACGGAATGGAAACGACAGAA
TATAACTAACCAACTGGAAAAATGGATGAAACTCAATGTAGAAGAGGGACTGTATAGCAGAACCCTGGCT
GGTAGCATCACAACACCTCCTCTGCTTATCGTATTTTATCAACAGCACTCTACCATCGATCCTATGTGGA
ATGTCCGCCACCTTGGTTCCAGTGCTGGAAAACGATATTCACCTCAGTTTGTAAAGGCTGCCAAGTTACT
CCATTGGAATGGACATTTGAAGCCATGGGGAAGGACTGCTTCATATACTGATGTTTGGGAAAAATGGTAT
ATTCCAGACCCAACAGGCAAATTCAACCTAATCCGAAGATATACCGAGATCTCAAACATAAAGTGA

Translation (371 aa):
MSFRKVNIIILVLAVALFLLVLHHNFLSLSSLLRNEVTDSGIVGPQPIDFVPNALRHAVDGRQEEIPVVI
AASEDRLGGAIAAINSIQHNTRSNVIFYIVTLNNTADHLRSWLNSDSLKSIRYKIVNFDPKLLEGKVKED
PDQGESMKPLTFARFYLPILVPSAKKAIYMDDDVIVQGDILALYNTALKPGHAAAFSEDCDSASTKVVIR
GAGNQYNYIGYLDYKKERIRKLSMKASTCSFNPGVFVANLTEWKRQNITNQLEKWMKLNVEEGLYSRTLA
GSITTPPLLIVFYQQHSTIDPMWNVRHLGSSAGKRYSPQFVKAAKLLHWNGHLKPWGRTASYTDVWEKWY
IPDPTGKFNLIRRYTEISNIK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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