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Report for CCDS20670.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20670.1 Public Mus musculus 6 Igbp1b 23 108 98 CCDS HistoryNCBI Gene:50540Re-query CCDS DB by CCDS ID:20670.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20670.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054786.5 ENSMUSP00000050818.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054786.5Link to Ensembl Protein Viewer:ENSMUSP00000050818.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000054786Re-query CCDS DB by Protein ID:ENSMUSP00000050818
Original member Current member NCBI NM_015777.3 NP_056592.2 Accepted alive Link to Nucleotide Sequence:NM_015777.3Link to Protein Sequence:NP_056592.2Re-query CCDS DB by Nucleotide ID:NM_015777Re-query CCDS DB by Protein ID:NP_056592Link to BLAST:NP_056592.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056592.2 343 Q9QZ29 343 99.4169% 0 2

Chromosomal Locations for CCDS 20670.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 138657413 138658444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGGCGTCGTTTATGGAGGAGATGCAGAAGCCGAAGCTCCGGGAGCTGTTGGAAACCGGCATACAACTTC
TGGAGGAGGTGGAAGCTGCGACCCAACCCACAGGCTCCAAGCCAATCCAGGAAAAGGTGAGGGAGGCCTT
GAAGCTCCTGGAGAAGGCCTCGGACATGTTATCGCAGCTCGATTTGTTCAGCAGGAACGAAGATTGGGAA
GAGATTGCTTCCGCTGACCTAAAGTACCTGATGCTCCCGGCCCTGAAGGGCGCGCTGACGCTGAAGCTGG
TGGGCAGCAGCAAACGCCTAGGCCTCCTGCAGGATGCTCGAGAACACTTCATGAACTTCCTAACCCAGAC
CCACAGCTACCATGTGGCTGATTTTCAGCTGCCCTGGGCCCAGAGCAGCTCAACGGAAGGCAACCCCGCT
GCCACCTCTGATGCCCAGGAGCAAAACCTGGTTGCCATGGCATCCCAGAGGCAGACCAAAATCCAGAGGT
ACAAGCAGAAGAAGGCGGTGGAGCAGAGGCTGTCTTCTCTGAAATCGGCAGTGGAGAGCGGCCAGGCTGA
CGATGAGCGTGTCAGGGAGTATTACCTCCTTCAGCTTCGTAGGTGGATTAGCATCAGCCTGGATGAGATC
GAGAACATCGAACAGGAGATAGAGATCCTGAGGGAAAGAGACTCCTTAGGTGAGACATCAGCATCTCGCT
CATCTCCTCAGGAGAGGCCTCCACTAAAACCCTTCGTCCTCACTCGAAGTGTTGCCCAAGCACAAGTGTT
TGGAGCTGGGTACCCAAGTCTGGCAACTATGACCGTGAATGACTGGTACGAGCAGCGCCAGAAAAATGAG
GTCTCACCAACTCTTCAGGAAGCAGAAAAGCAGGCACCACCATCTGAGACTTTCACTGTATCTGAGAAGG
AAGAGCCAGACCTGGAGCAAAAGGAAGATGAAGATGAGAATGCCCTCCACAGGATGCAGGAGTGGGATGA
CTGGAAGGACACTCATCCTAGGGGATATGGCAACCGACAGAACATGGGCTAA

Translation (343 aa):
MASFMEEMQKPKLRELLETGIQLLEEVEAATQPTGSKPIQEKVREALKLLEKASDMLSQLDLFSRNEDWE
EIASADLKYLMLPALKGALTLKLVGSSKRLGLLQDAREHFMNFLTQTHSYHVADFQLPWAQSSSTEGNPA
ATSDAQEQNLVAMASQRQTKIQRYKQKKAVEQRLSSLKSAVESGQADDERVREYYLLQLRRWISISLDEI
ENIEQEIEILRERDSLGETSASRSSPQERPPLKPFVLTRSVAQAQVFGAGYPSLATMTVNDWYEQRQKNE
VSPTLQEAEKQAPPSETFTVSEKEEPDLEQKEDEDENALHRMQEWDDWKDTHPRGYGNRQNMG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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