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Report for CCDS16941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16941.1 Public Mus musculus 2 a 23 108 98 CCDS HistoryNCBI Gene:50518Re-query CCDS DB by CCDS ID:16941.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029123.2 ENSMUSP00000029123.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029123.2Link to Ensembl Protein Viewer:ENSMUSP00000029123.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000029123Re-query CCDS DB by Protein ID:ENSMUSP00000029123
Original member Current member EBI ENSMUST00000109697.7 ENSMUSP00000105319.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109697.7Link to Ensembl Protein Viewer:ENSMUSP00000105319.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109697Re-query CCDS DB by Protein ID:ENSMUSP00000105319
Original member Current member NCBI NM_015770.3 NP_056585.2 Accepted alive Link to Nucleotide Sequence:NM_015770.3Link to Protein Sequence:NP_056585.2Re-query CCDS DB by Nucleotide ID:NM_015770Re-query CCDS DB by Protein ID:NP_056585Link to BLAST:NP_056585.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056585.2 131 Q03288 131 100% 0 0

Chromosomal Locations for CCDS 16941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155045622 155045781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155047676 155047740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155050628 155050798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGGATGTCACCCGCCTACTCCTGGCCACCCTAGTGGGCTTCCTGTGCTTCTTCACCGTCCACAGCCACC
TGGCACTCGAGGAGACGCTTGGAGATGACAGGAGTCTGCGGAGTAACTCCTCCATGAACTCGCTGGATTT
CTCCTCTGTTTCTATCGTGGCACTGAACAAGAAATCCAAGAAGATCAGCAGAAAAGAAGCCGAGAAGCGG
AAGAGGTCTTCCAAGAAAAAGGCTTCGATGAAGAAGGTGGCAAGGCCCCCGCCACCTTCGCCCTGCGTGG
CCACCCGCGACAGCTGCAAGCCACCCGCACCCGCCTGCTGCGACCCGTGCGCCTCCTGCCAGTGCCGTTT
CTTCGGCAGCGCCTGCACCTGTCGAGTACTCAACCCCAACTGCTGA

Translation (131 aa):
MDVTRLLLATLVGFLCFFTVHSHLALEETLGDDRSLRSNSSMNSLDFSSVSIVALNKKSKKISRKEAEKR
KRSSKKKASMKKVARPPPPSPCVATRDSCKPPAPACCDPCASCQCRFFGSACTCRVLNPNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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