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Report for CCDS17461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17461.1 Public Mus musculus 3 Nes 23 108 98 CCDS HistoryNCBI Gene:18008Re-query CCDS DB by CCDS ID:17461.1Re-query CCDS DB by GeneID:18008See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17461.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090973.11 ENSMUSP00000088493.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090973.11Link to Ensembl Protein Viewer:ENSMUSP00000088493.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090973Re-query CCDS DB by Protein ID:ENSMUSP00000088493
Original member Current member NCBI NM_016701.3 NP_057910.3 Accepted alive Link to Nucleotide Sequence:NM_016701.3Link to Protein Sequence:NP_057910.3Re-query CCDS DB by Nucleotide ID:NM_016701Re-query CCDS DB by Protein ID:NP_057910Link to BLAST:NP_057910.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057910.3 1864 Q6P5H2-1 1864 100% 0 0

Chromosomal Locations for CCDS 17461.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87971203 87971988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87972992 87973116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87974802 87974875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87975421 87980030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5595 nt):
ATGGAGGGTTGCGTCGGGGAAGAATCTTTTCAGATGTGGGAGCTCAATCGACGCCTGGAGGCCTACCTGA
CCCGGGTCAAGACGCTGGAGGAGCAGAACCAGCTGCTCAGTGCCGAGCTTGGGGGACTCCGGGCGCAGTC
CGGGGACGCCTCCTGGCGAGCCCGAGCCGACGACGAGCTGGCAGCCCTGCGGGTCCTCGTCGATCAGCGC
TGGCGGGAGAAGCACGAGGCTGAGGTGCAGCGCGACAACCTTGCCGAAGAGCTGGAGAGCGTGGCGGGCC
GGTGCCAGCAGGTGCGGCTCGCCCGGGAGCGGACCATCGAGGAGGCGGCCTGCAGCCGGCGCGCGCTCGA
GGCGGAGAAGAATGCGCGGGGCTGGCTGAGCACCCAGGCTGCCGAGCTGGAGCGCGAGTTAGAGGCTCTG
CGAGCGTCGCACGAGGAGGAGCGCGCGCACCTGAACGCCCAGGCCGCCTGTACGCCGCGCCGACCCCCCG
CGCCGGCCCACGCATCCCCCATCCGGGCCCCTGAAGTCGAGGAGCTGGCCAGGCGCCTAGGCGAAGTGTG
GCGCGGGGCGGTGCGTGACTACCAGGAGCGCGTGGCTCACATGGAGAGCTCGCTGGGCCAGGCCCGCGAG
CGTCTGGGCCAAGCCGTGCGGGGCGCTCGGGAGAGTCGCTTAGAGGTGCAGCAGCTGCAGGCTGATCGCG
ACAGCCTCCAGGAGCGCAGAGAGGCGCTGGAACAGAGATTGGAAGGCCGCTGGCAGGACCGGCTGCAGGC
CACTGAAAAGTTCCAGCTGGCTGTGGAAGCCCTGGAGCAGGAGAAGCAGGGTCTACAGAGTCAGATCGCT
CAGATCCTGGAAGGTGGGCAGCAACTGGCACACCTCAAGATGTCCCTTAGTCTGGAAGTGGCTACATACA
GGACTCTGCTGGAGGCTGAGAACTCTCGCTTGCAGACACCTGGAAGAAGTTCCCAGGCTTCTCTTGGCTT
TCCTGACCCCAAGCTGAAGCTGCATTTCCTTGGGATACCAGAGGACCAGCACCTGGGATCTGTGCTCCCT
GTCCTCAGCCCAACATCCTTCTCTTCCCCCTTGCCTAATACCCTTGAGACTCCTGTGACAGCCTTTCTGA
AGACACAGGAATTCCTTAAGGCCAGAACCCCCACCTTGGCCAGCACTCCCATCCCACCTATGTCTGAGGC
TCCCTATCCTAAAAATGCAGAGGTCAGAGCCCAGGATGTCCCCCATTCCCTGCTCCAGGGTGGGAGGCAA
CAGGCTCCAGAGCCTCTTTGGGCTGAGGCCACAGTGCCCAGTTCTACTGGTGTCCTCCCAGAGCTGGAGG
AGCCTGGGGGCGAGCAGCCGGACCACTTCCCTGATGATCCAACCTCCTTAGCCCCACCCCTCAACCCTCA
CCACTCTATTTTAGAGGCTAAAGATAGAGAATCCAGTGAGTCTAGAGTTTCTAGCATATTCCAGGAAGAA
GAAGGGCAAATCTGGGAACTTGTAAAGAAAGAAGCAGCCACAGAGGTAAAAGTAGAAAACAGCTTAGCAC
AGGAAATACAAGAAAGTGGTCTGGACACAGAAGAAATCCAGGATTCCCAGGGACCTTTGCAGATGGAAAC
CCTGGAGGCTCTAGGAGATGAGCCACTGATGTCTCTGAAAACCCAGAACCATGAGACCCCAGGAAAGGAG
AATTGCAATTCATCTATAGAAGAGAACTCGGGGACAGTAAAAAGCCCAGAAAAAGAAAAACAAACACCAC
TGAAGTCTTTAGAAGAAAAGAATGTAGAGGCAGAGAAAACTCTAGAAAATGGGGTTCTTGAACTATCTAA
ACCTTTAGGAGAAGAAGAACCAAGAATGGAGGATCAAGAATTAATGTCTCCTGAACACACACTAGAGACA
GTTTCATTTCTAGGAAAGGAAAATCAGGAAGTAGTGAGGTCTTCAGAAGAACAGAACTTAGAATCATTGA
TAACTTTTAAAGAGGAGAGCCAATACCCACTGGGAGGTCCAGAAGCCGAGGACCAGATGCTTGAAAGACT
GGTAGAGAAAGAGGATCAGAGGTTCCCAAGGTCTCCAGAAGAAGACCAGCAGGCGTTTAGACCTCTGGAG
AAAGAGAATCAGGAGCCACTAAGATTTGAAGAAGCAGAGGACCAGGTGCTTGAGAGACTGATAGAAAAGG
AAAGGCAGGAGTCCCTGAAGTCTCCAGAAGAAGAGGACCAGCAGGCATTTAGACTTCTGGAGAAAGAGAA
TCAAGAACCACTAAGGTTTGAAGACGCAGAGGACCAGGTGCTTGAGAGACTGATAGAAAAGGAAAGACAG
GAGTCCCTGAAGTCTCCAGAAGAAGAGGACCAGCAGGCATTTAGACTTCTGGAGAAAGAGAATCAAGAAC
CACTAAGGTTTGAAGAAGCAGAGGACCAGGTGCTTGAGAGACTGGTAGAAAAGGAAAGTCAGGAGTCCCT
GAAGTCTCCAGAAGAGGAGGACCAGAGGACTGGGAAGCCTCTAGAAAAAGAAAATCAGGAATCTCTGAGG
TCTCTTGATGAAAACCAGGAGACAATTGTACTGCTAGAAAGCAAGAACCAGAGGCCACTGAGATCTCTAG
AAGTAGAAGAGGAGGAGCAGAGAATTGTGAAACCTCTAGAAAAAGTGAGCCAGGTCTCCCTCGAATCTCT
CGAAAAAGAGAATGTGCAGTCACCAAGGTATCTGGAAGAAGATGACCACATGATTAAGAGCCTGCTAGAA
GACAAGACTCATGAGATCCTGGGATCTCTTGAAGATAGAAATGGGGAGAACTTTATACCACCTGAAAATG
AGACCCAGGGTTCATTGAGGCCTCCAGAAGAAGAGGACCAGAGGATTGTGAACCATCTAGAAAAAGAAAG
CCAGGAGTTCCTGAGGTCTCCAGAAGCAGAGGAAGAAGAAGAGCAGGTGATGGTGAGATCTCTAGAAGGA
GAGAACCACGACCCACTGAGCTCTGTGGTGAAAGAGGAGCAGATGGCTGAGAGCAAGCTAGAGAACGAGA
GTCAGGACTCCAGGAAGTCTCTTGAAGATGAGAGCCAGGAGACCTTTGGGTCTCTGGAAAAAGAGAATCT
AGAGTCCCTGAGGTCTCTAGCAGGACAGGACCAAGAGGAACAGAAACTCGAACAAGAGACCCAGCAGCCA
CTGAGGGCTGTAGAAGATGAGCAGATGACAGTGAACCCTCCAGAAAAGGTGGATCCAGAGTTACCAAAGC
CTCTTAGAAATGACCAGGAAGTAGTCAGATCTCTTGACAAGGAGAATCAAGAGTCACTAGTGTCACTGAA
TGAAGGAGGTATGGAGACAGTGAAGTCTTCAGAAACAGAGAACATAGAATCACTGGAGACTGTGGGAGAG
TGCCTGGGAAGAAGGAAGTCTGTAGATACTCAAGAGCCATTGTGGTCTACGGAAGTGACTAGTGAGACAA
TAGAACCTCTAGAAGATGAGACCCAAGAACCACTGGGGTGTGTGGATGAGAACCAAGAGGTGCTGACACC
CCTTGAAAGGGAGAGTCAAGAACTGAGATCTCTGGGCAAGTGGAACCCAGAGACTGTGGAATCACCAGGA
GGGGTGGAGGACAGTCAGCAGTGCCTGGAAGTGGAAGAGGGCCCGGAGAGGGAGCAGCACCAAGAGTCTC
TGAGGTCTCTGGGAGAGGTGGAATGGGAGCTGCCTGGATCTGGAAGTCAACAGAGGTGGGAGGATGTGGT
GGAGGATGGAGAAGGTCAGGAAGCATCCCTGGGGGCTACAGGAGTGGAAACTGAGGATAAGGCAGAGTTG
CATCTGAGGGGCCAAGGTGGGGAGGAGAAAGCTGTAGAGGAGGGAGAGCTGCTGCAGGATGCTGTGGGGG
AGGCCTGGAGTCTGGGGAGCTCGGAGCCCAAGGAGCAGAGGGTCCCTGCTGAGCCCCTCGATGACCTGGA
GGGACAACCAGAGCAGACGGGAACCCTAGAGGTCCCAGTTGCTCAGGGAATGCCAGAGGCAACAGAGCAA
GATGAGGACAGAGCCCAAGCAGGTGAACAAGACTCCGTAGAGGTGACCCTTGGGTTAGAGGCTGCCAGAG
CTGGACTGGAACTCGAGCAGGAAGTGGTAGGGCTAGAGGACCCAAGGCATTTCGCCAGGGAGGAGGCCAT
TCACCCATCCCTGGGGGAGGAAAGTGTGAAGGCAAAGATAGATCAGGGCTTGGAAGAGCCTGGAAAGGAA
CCAAAAGAGGCAGGTGCTCTGGACTCAGGCATCCCTGAATTACCCAAGACTAGCAGTGAGACTCTGGAAT
GCAAGGGCTGGGAAGAGTCTGGGGAGGGCTGGGGAGAAGAGGAGGCCTCGCTGGAGACCTCAGACCATGA
GGGCAGCCATGCCCCTCAGCCCAGGCCCCCTAAGACAGAGGAAGATGAGGGTCTACAGGCAGCGCTAACA
GTCCCTGGTCCCAAGCTCCTGGAACCCTGTTCACCCATCCCGATCTTGACAGATGCCCATGAGCTGCAGC
CCCAAGCTGAGGGGATCCAGGAGGCTGGGTGGCAGCCGGAAGCTGGGACTGAAGCACTGGGAAGAGTAGA
AGATGAGCCAGAGTTTGGTCGTGGGGAGATTCCTGAGGGCCTCCAGGATTGGGAGGAGGGCAGAGAAGAC
AGTGAGGCAGATGAGTTAGGGGAAACTCTCCCTGACTCTACTCCCTTGGGCCTCTACCTGAAGTCTCCTG
CCTCCCCAAAGTGGGAGCAAGCTGGAGAACAGAGGCTTTTCCCTCAAGGGGAGGCCAGGAAGGAAGGCTG
GAGTCCTGCTGCCCTGGCTGCCCAGGGTCTCAGTGACCCACCAGAGGAAGAGCAGCAAGGCCATGACTCT
GACCTCTCATCTGAGGAATTTGAGGACCTAGGGACTGAGGCCTCTCTTCTTCCAGGGGTTCCCAAAGAGG
TGTCCGATCATCTGGGCCAAGAGCCCCCCGTACTGCAGCCTGCATGCTGGGATCAGGGTGGGGAGTCTGA
TGGGTTTGCTGATGAGGAAGAGAGTGGGGAAGAGGGAGAGGAAGAAGATGCTGATGAAGAAGAAGGAGCA
GAGTCAGGGACTCAGTGGTGGGGGCCAGGGCCCTCTGGTGGAGGTGTCAAGGTCCAGGATGTCACCCAGA
GAGGGGACCTGGAACATGAATCTGTGGGTGACAGTGGCCTCTGGGATGATGGCTTGAGTGGGGCTGCAGC
TAATGTTCTTGTAACTGCCCTAGAGACGGTGTCTCAGGACAGTGCTGAGCCTTCCGGGTCAGAGGGGTCT
GAGTCTGCTTCCTTGGAGGGGGAGGAAGGTCAAGCGATTGACCATTTAGATGCCCCCCAAGAGGTGACTA
GCGTGGTCCCAGGGGCAGGAGACACCTTTGATATCAGTGGCCAGGGCCCCAACCTGGAGTCAGAGCAAGT
GAATGGGAGGATGGAGAATGGACTAGAGCAGGCTGAGGGTCAGGTGGTTCTGCATGGGGACGAGGATCAA
GGCATCCCTTTACAGGAACAGGGTACCCTCAAGGCCCCTTTAGTAGGGTCTCCTGTGCATCTAGGCCCAA
GCCAGCCGCTGAAGTTCACTCTGAGTGGGGTAGATGGAGACTCCTGGTCCTCAGGGGAAGATTAG

Translation (1864 aa):
MEGCVGEESFQMWELNRRLEAYLTRVKTLEEQNQLLSAELGGLRAQSGDASWRARADDELAALRVLVDQR
WREKHEAEVQRDNLAEELESVAGRCQQVRLARERTIEEAACSRRALEAEKNARGWLSTQAAELERELEAL
RASHEEERAHLNAQAACTPRRPPAPAHASPIRAPEVEELARRLGEVWRGAVRDYQERVAHMESSLGQARE
RLGQAVRGARESRLEVQQLQADRDSLQERREALEQRLEGRWQDRLQATEKFQLAVEALEQEKQGLQSQIA
QILEGGQQLAHLKMSLSLEVATYRTLLEAENSRLQTPGRSSQASLGFPDPKLKLHFLGIPEDQHLGSVLP
VLSPTSFSSPLPNTLETPVTAFLKTQEFLKARTPTLASTPIPPMSEAPYPKNAEVRAQDVPHSLLQGGRQ
QAPEPLWAEATVPSSTGVLPELEEPGGEQPDHFPDDPTSLAPPLNPHHSILEAKDRESSESRVSSIFQEE
EGQIWELVKKEAATEVKVENSLAQEIQESGLDTEEIQDSQGPLQMETLEALGDEPLMSLKTQNHETPGKE
NCNSSIEENSGTVKSPEKEKQTPLKSLEEKNVEAEKTLENGVLELSKPLGEEEPRMEDQELMSPEHTLET
VSFLGKENQEVVRSSEEQNLESLITFKEESQYPLGGPEAEDQMLERLVEKEDQRFPRSPEEDQQAFRPLE
KENQEPLRFEEAEDQVLERLIEKERQESLKSPEEEDQQAFRLLEKENQEPLRFEDAEDQVLERLIEKERQ
ESLKSPEEEDQQAFRLLEKENQEPLRFEEAEDQVLERLVEKESQESLKSPEEEDQRTGKPLEKENQESLR
SLDENQETIVLLESKNQRPLRSLEVEEEEQRIVKPLEKVSQVSLESLEKENVQSPRYLEEDDHMIKSLLE
DKTHEILGSLEDRNGENFIPPENETQGSLRPPEEEDQRIVNHLEKESQEFLRSPEAEEEEEQVMVRSLEG
ENHDPLSSVVKEEQMAESKLENESQDSRKSLEDESQETFGSLEKENLESLRSLAGQDQEEQKLEQETQQP
LRAVEDEQMTVNPPEKVDPELPKPLRNDQEVVRSLDKENQESLVSLNEGGMETVKSSETENIESLETVGE
CLGRRKSVDTQEPLWSTEVTSETIEPLEDETQEPLGCVDENQEVLTPLERESQELRSLGKWNPETVESPG
GVEDSQQCLEVEEGPEREQHQESLRSLGEVEWELPGSGSQQRWEDVVEDGEGQEASLGATGVETEDKAEL
HLRGQGGEEKAVEEGELLQDAVGEAWSLGSSEPKEQRVPAEPLDDLEGQPEQTGTLEVPVAQGMPEATEQ
DEDRAQAGEQDSVEVTLGLEAARAGLELEQEVVGLEDPRHFAREEAIHPSLGEESVKAKIDQGLEEPGKE
PKEAGALDSGIPELPKTSSETLECKGWEESGEGWGEEEASLETSDHEGSHAPQPRPPKTEEDEGLQAALT
VPGPKLLEPCSPIPILTDAHELQPQAEGIQEAGWQPEAGTEALGRVEDEPEFGRGEIPEGLQDWEEGRED
SEADELGETLPDSTPLGLYLKSPASPKWEQAGEQRLFPQGEARKEGWSPAALAAQGLSDPPEEEQQGHDS
DLSSEEFEDLGTEASLLPGVPKEVSDHLGQEPPVLQPACWDQGGESDGFADEEESGEEGEEEDADEEEGA
ESGTQWWGPGPSGGGVKVQDVTQRGDLEHESVGDSGLWDDGLSGAAANVLVTALETVSQDSAEPSGSEGS
ESASLEGEEGQAIDHLDAPQEVTSVVPGAGDTFDISGQGPNLESEQVNGRMENGLEQAEGQVVLHGDEDQ
GIPLQEQGTLKAPLVGSPVHLGPSQPLKFTLSGVDGDSWSSGED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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