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Report for CCDS5686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5686.1 Public Homo sapiens 7 TAF6 24 110 108 CCDS HistoryNCBI Gene:6878Re-query CCDS DB by CCDS ID:5686.1Re-query CCDS DB by GeneID:6878See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5686.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344095.8 ENSP00000344537.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344095.8Link to Ensembl Protein Viewer:ENSP00000344537.4Re-query CCDS DB by Nucleotide ID:ENST00000344095Re-query CCDS DB by Protein ID:ENSP00000344537
Original member Current member EBI ENST00000453269.7 ENSP00000389575.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000453269.7Link to Ensembl Protein Viewer:ENSP00000389575.2Re-query CCDS DB by Nucleotide ID:ENST00000453269Re-query CCDS DB by Protein ID:ENSP00000389575
Original member Current member EBI ENST00000452041.5 ENSP00000416396.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452041.5Link to Ensembl Protein Viewer:ENSP00000416396.1Re-query CCDS DB by Nucleotide ID:ENST00000452041Re-query CCDS DB by Protein ID:ENSP00000416396
Original member Current member EBI ENST00000472509.6 ENSP00000419760.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000472509.6Link to Ensembl Protein Viewer:ENSP00000419760.2Re-query CCDS DB by Nucleotide ID:ENST00000472509Re-query CCDS DB by Protein ID:ENSP00000419760
Original member Current member EBI ENST00000460673.3 ENSP00000427710.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000460673.3Link to Ensembl Protein Viewer:ENSP00000427710.3Re-query CCDS DB by Nucleotide ID:ENST00000460673Re-query CCDS DB by Protein ID:ENSP00000427710
Original member Current member EBI ENST00000687137.1 ENSP00000508432.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687137.1Link to Ensembl Protein Viewer:ENSP00000508432.1Re-query CCDS DB by Nucleotide ID:ENST00000687137Re-query CCDS DB by Protein ID:ENSP00000508432
Original member Current member EBI ENST00000687969.1 ENSP00000508679.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687969.1Link to Ensembl Protein Viewer:ENSP00000508679.1Re-query CCDS DB by Nucleotide ID:ENST00000687969Re-query CCDS DB by Protein ID:ENSP00000508679
Original member Current member EBI ENST00000688343.1 ENSP00000508691.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688343.1Link to Ensembl Protein Viewer:ENSP00000508691.1Re-query CCDS DB by Nucleotide ID:ENST00000688343Re-query CCDS DB by Protein ID:ENSP00000508691
Original member Current member EBI ENST00000692466.1 ENSP00000509041.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692466.1Link to Ensembl Protein Viewer:ENSP00000509041.1Re-query CCDS DB by Nucleotide ID:ENST00000692466Re-query CCDS DB by Protein ID:ENSP00000509041
Original member Current member EBI ENST00000687410.1 ENSP00000509158.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687410.1Link to Ensembl Protein Viewer:ENSP00000509158.1Re-query CCDS DB by Nucleotide ID:ENST00000687410Re-query CCDS DB by Protein ID:ENSP00000509158
Original member Current member EBI ENST00000692927.1 ENSP00000509335.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692927.1Link to Ensembl Protein Viewer:ENSP00000509335.1Re-query CCDS DB by Nucleotide ID:ENST00000692927Re-query CCDS DB by Protein ID:ENSP00000509335
Original member Current member EBI ENST00000691681.1 ENSP00000509494.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691681.1Link to Ensembl Protein Viewer:ENSP00000509494.1Re-query CCDS DB by Nucleotide ID:ENST00000691681Re-query CCDS DB by Protein ID:ENSP00000509494
Original member Current member EBI ENST00000691370.1 ENSP00000509500.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691370.1Link to Ensembl Protein Viewer:ENSP00000509500.1Re-query CCDS DB by Nucleotide ID:ENST00000691370Re-query CCDS DB by Protein ID:ENSP00000509500
Original member Current member EBI ENST00000688640.1 ENSP00000509783.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688640.1Link to Ensembl Protein Viewer:ENSP00000509783.1Re-query CCDS DB by Nucleotide ID:ENST00000688640Re-query CCDS DB by Protein ID:ENSP00000509783
Original member Current member EBI ENST00000689754.1 ENSP00000509866.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689754.1Link to Ensembl Protein Viewer:ENSP00000509866.1Re-query CCDS DB by Nucleotide ID:ENST00000689754Re-query CCDS DB by Protein ID:ENSP00000509866
Original member Current member EBI ENST00000686777.1 ENSP00000510166.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686777.1Link to Ensembl Protein Viewer:ENSP00000510166.1Re-query CCDS DB by Nucleotide ID:ENST00000686777Re-query CCDS DB by Protein ID:ENSP00000510166
Original member Current member EBI ENST00000685280.1 ENSP00000510209.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685280.1Link to Ensembl Protein Viewer:ENSP00000510209.1Re-query CCDS DB by Nucleotide ID:ENST00000685280Re-query CCDS DB by Protein ID:ENSP00000510209
Original member Current member EBI ENST00000687447.1 ENSP00000510217.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687447.1Link to Ensembl Protein Viewer:ENSP00000510217.1Re-query CCDS DB by Nucleotide ID:ENST00000687447Re-query CCDS DB by Protein ID:ENSP00000510217
Original member Current member EBI ENST00000686580.1 ENSP00000510270.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000686580.1Link to Ensembl Protein Viewer:ENSP00000510270.1Re-query CCDS DB by Nucleotide ID:ENST00000686580Re-query CCDS DB by Protein ID:ENSP00000510270
Original member Current member EBI ENST00000688498.1 ENSP00000510409.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688498.1Link to Ensembl Protein Viewer:ENSP00000510409.1Re-query CCDS DB by Nucleotide ID:ENST00000688498Re-query CCDS DB by Protein ID:ENSP00000510409
Original member Current member NCBI NM_001364998.1 NP_001351927.1 Accepted alive Link to Nucleotide Sequence:NM_001364998.1Link to Protein Sequence:NP_001351927.1Re-query CCDS DB by Nucleotide ID:NM_001364998Re-query CCDS DB by Protein ID:NP_001351927Link to BLAST:NP_001351927.1
Original member Current member NCBI NM_001364999.1 NP_001351928.1 Accepted alive Link to Nucleotide Sequence:NM_001364999.1Link to Protein Sequence:NP_001351928.1Re-query CCDS DB by Nucleotide ID:NM_001364999Re-query CCDS DB by Protein ID:NP_001351928Link to BLAST:NP_001351928.1
Original member Current member NCBI NM_005641.4 NP_005632.1 Accepted alive Link to Nucleotide Sequence:NM_005641.4Link to Protein Sequence:NP_005632.1Re-query CCDS DB by Nucleotide ID:NM_005641Re-query CCDS DB by Protein ID:NP_005632Link to BLAST:NP_005632.1
Original member Current member NCBI NM_139315.3 NP_647476.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139315.3Link to Protein Sequence:NP_647476.1Re-query CCDS DB by Nucleotide ID:NM_139315Re-query CCDS DB by Protein ID:NP_647476Link to BLAST:NP_647476.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351927.1 677 P49848-1 677 100% 0 0
NP_001351928.1 677 P49848-1 677 100% 0 0
NP_005632.1 677 P49848-1 677 100% 0 0
NP_647476.1 677 P49848-1 677 100% 0 0

Chromosomal Locations for CCDS 5686.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100107246 100107623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100107926 100108123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100108367 100108540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100109948 100110073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100110200 100110274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100111139 100111321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100111728 100111829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100111922 100111999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100112108 100112253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100112798 100112917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100113349 100113405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100113616 100113769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100113868 100113954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100114054 100114209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGGCTGAGGAGAAGAAGCTGAAGCTTAGCAACACTGTGCTGCCCTCGGAGTCCATGAAGGTGGTGGCTG
AATCCATGGGCATCGCCCAGATTCAGGAGGAGACCTGCCAGCTGCTAACGGATGAGGTCAGCTACCGCAT
CAAAGAGATCGCACAGGATGCCTTGAAGTTCATGCACATGGGGAAGCGGCAGAAGCTCACCACCAGTGAC
ATTGACTACGCCTTGAAGCTAAAGAATGTCGAGCCACTCTATGGCTTCCACGCCCAGGAGTTCATTCCTT
TCCGCTTCGCCTCTGGTGGGGGCCGGGAGCTTTACTTCTATGAGGAGAAGGAGGTTGATCTGAGCGACAT
CATCAATACCCCTCTGCCCCGGGTGCCCCTGGACGTCTGCCTCAAAGCTCATTGGCTGAGCATCGAGGGC
TGCCAGCCAGCTATCCCCGAGAACCCGCCCCCAGCTCCCAAAGAGCAACAGAAGGCTGAAGCCACAGAAC
CCCTGAAGTCAGCCAAGCCAGGCCAGGAGGAAGACGGACCCCTGAAGGGCAAAGGTCAAGGGGCCACCAC
AGCCGACGGCAAAGGGAAAGAGAAGAAGGCGCCGCCCTTGCTGGAGGGGGCCCCCTTGCGACTGAAGCCC
CGGAGCATCCACGAGTTGTCTGTGGAGCAGCAGCTCTACTACAAGGAGATCACCGAGGCCTGCGTGGGCT
CCTGCGAGGCCAAGAGGGCGGAAGCCCTGCAAAGCATTGCCACGGACCCTGGACTGTATCAGATGCTGCC
ACGGTTCAGTACCTTTATCTCGGAGGGGGTCCGTGTGAACGTGGTTCAGAACAACCTGGCCCTACTCATC
TACCTGATGCGTATGGTGAAAGCGCTGATGGACAACCCCACGCTCTATCTAGAAAAATACGTCCATGAGC
TGATTCCAGCTGTGATGACCTGCATCGTGAGCAGACAGTTGTGCCTGCGACCAGATGTGGACAATCACTG
GGCACTCCGAGACTTTGCTGCCCGCCTGGTGGCCCAGATCTGCAAGCATTTTAGCACAACCACTAACAAC
ATCCAGTCCCGGATCACCAAGACCTTCACCAAGAGCTGGGTGGACGAGAAGACGCCCTGGACGACTCGTT
ATGGCTCCATCGCAGGCTTGGCTGAGCTGGGACACGATGTTATCAAGACTCTGATTCTGCCCCGGCTGCA
GCAGGAAGGGGAGCGGATCCGCAGTGTGCTGGACGGCCCTGTGCTGAGCAACATTGACCGGATTGGAGCA
GACCATGTGCAGAGCCTCCTGCTGAAACACTGTGCTCCTGTTCTGGCAAAGCTGCGCCCACCGCCTGACA
ATCAGGACGCCTATCGGGCAGAATTCGGGTCCCTTGGGCCCCTCCTCTGCTCCCAGGTGGTCAAGGCTCG
GGCCCAGGCTGCTCTGCAGGCTCAGCAGGTCAACAGGACCACTCTGACCATCACGCAGCCCCGGCCCACG
CTGACCCTCTCGCAGGCCCCACAGCCTGGCCCTCGCACCCCTGGCTTGCTGAAGGTTCCTGGCTCCATCG
CACTTCCTGTCCAGACACTGGTGTCTGCACGAGCGGCTGCCCCACCACAGCCTTCCCCTCCTCCAACCAA
GTTTATTGTAATGTCATCGTCCTCCAGCGCCCCATCCACCCAGCAGGTCCTGTCCCTCAGCACCTCGGCC
CCCGGCTCAGGTTCCACCACCACTTCGCCCGTCACCACCACCGTCCCCAGCGTGCAGCCCATCGTCAAGT
TGGTCTCCACCGCCACCACCGCACCCCCCAGCACTGCTCCCTCTGGTCCTGGGAGTGTCCAGAAGTACAT
CGTGGTCTCACTTCCCCCAACAGGGGAGGGCAAAGGAGGCCCCACCTCCCATCCTTCTCCAGTTCCTCCC
CCGGCATCGTCCCCGTCCCCACTCAGCGGCAGTGCCCTTTGTGGGGGGAAGCAGGAGGCTGGGGACAGTC
CCCCTCCAGCTCCAGGGACTCCAAAAGCCAATGGCTCCCAGCCCAACTCCGGCTCCCCTCAGCCTGCTCC
GTGA

Translation (677 aa):
MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSD
IDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCLKAHWLSIEG
CQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGKGKEKKAPPLLEGAPLRLKP
RSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLI
YLMRMVKALMDNPTLYLEKYVHELIPAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNN
IQSRITKTFTKSWVDEKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGA
DHVQSLLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTITQPRPT
LTLSQAPQPGPRTPGLLKVPGSIALPVQTLVSARAAAPPQPSPPPTKFIVMSSSSSAPSTQQVLSLSTSA
PGSGSTTTSPVTTTVPSVQPIVKLVSTATTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPP
PASSPSPLSGSALCGGKQEAGDSPPPAPGTPKANGSQPNSGSPQPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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