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Report for CCDS30756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30756.1 Public Homo sapiens 1 LHX8 24 110 108 CCDS HistoryNCBI Gene:431707Re-query CCDS DB by CCDS ID:30756.1Re-query CCDS DB by GeneID:431707See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30756.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294638.9 ENSP00000294638.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000294638.9Link to Ensembl Protein Viewer:ENSP00000294638.5Re-query CCDS DB by Nucleotide ID:ENST00000294638Re-query CCDS DB by Protein ID:ENSP00000294638
Original member Current member NCBI NM_001001933.1 NP_001001933.1 Accepted alive Link to Nucleotide Sequence:NM_001001933.1Link to Protein Sequence:NP_001001933.1Re-query CCDS DB by Nucleotide ID:NM_001001933Re-query CCDS DB by Protein ID:NP_001001933Link to BLAST:NP_001001933.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001933.1 356 Q68G74-1 356 100% 0 0

Chromosomal Locations for CCDS 30756.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75130715 75130732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75136603 75136689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75137100 75137261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75140985 75141106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75143118 75143338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75143845 75143948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75148587 75148682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75156893 75157076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75160819 75160895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGCAGATTCTGAGCAGGTGTCAGGGGCTCATGTCAGAGGAGTGCGGGCGGACTACAGCCCTGGCGGCCG
GGAGGACTCGCAAAGGCGCCGGGGAAGAGGGACTGGTGAGCCCCGAGGGAGCGGGGGACGAGGACTCGTG
CTCCTCCTCGGCCCCGCTGTCCCCGTCGTCCTCGCCCCGGTCCATGGCCTCGGGCTCCGGCTGCCCTCCT
GGCAAGTGTGTGTGCAACAGTTGCGGCCTGGAGATCGTGGACAAATACCTTCTCAAGGTGAATGACCTAT
GCTGGCATGTCCGGTGTCTCTCCTGCAGTGTTTGCAGAACCTCCCTAGGAAGGCACACCAGCTGTTATAT
TAAAGACAAAGACATTTTCTGCAAACTTGATTATTTCAGAAGGTATGGAACTCGCTGCTCTCGATGTGGG
AGACACATCCATTCTACTGACTGGGTCCGGAGAGCCAAGGGGAATGTCTATCACTTGGCATGCTTTGCCT
GCTTTTCCTGCAAAAGGCAACTTTCCACAGGAGAGGAGTTTGCTTTGGTGGAAGAGAAAGTCCTCTGCAG
AGTACATTATGACTGCATGCTGGATAATTTAAAAAGAGAAGTAGAAAATGGGAATGGGATTAGTGTGGAA
GGTGCCCTCCTCACAGAGCAAGATGTTAACCATCCAAAACCAGCAAAAAGAGCTCGGACCAGCTTTACAG
CAGATCAGCTTCAGGTTATGCAAGCACAATTTGCTCAGGACAACAACCCAGATGCACAGACACTCCAGAA
ATTGGCAGAAAGGACAGGCTTGAGCAGACGTGTGATACAGGTGTGGTTTCAGAATTGTAGAGCACGCCAC
AAGAAACACGTCAGTCCTAATCACTCATCCTCCACCCCAGTCACAGCAGTCCCACCCTCCAGGCTGTCTC
CACCCATGTTAGAAGAAATGGCTTATTCTGCCTACGTGCCCCAAGATGGAACGATGTTAACTGCGCTGCA
TAGTTATATGGATGCTCATTCACCAACAACTCTTGGACTCCAGCCCTTGTTACCCCATTCAATGACACAA
CTGCCAATAAGTCATACCTAA

Translation (356 aa):
MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPRSMASGSGCPP
GKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCG
RHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVE
GALLTEQDVNHPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARH
KKHVSPNHSSSTPVTAVPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQ
LPISHT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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