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Report for CCDS31398.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31398.1 Public Homo sapiens 11 OR52N1 24 110 108 CCDS HistoryNCBI Gene:79473Re-query CCDS DB by CCDS ID:31398.1Re-query CCDS DB by GeneID:79473See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31398.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641645.1 ENSP00000493272.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641645.1Link to Ensembl Protein Viewer:ENSP00000493272.1Re-query CCDS DB by Nucleotide ID:ENST00000641645Re-query CCDS DB by Protein ID:ENSP00000493272
Original member Current member NCBI NM_001001913.2 NP_001001913.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001913.2Link to Protein Sequence:NP_001001913.1Re-query CCDS DB by Nucleotide ID:NM_001001913Re-query CCDS DB by Protein ID:NP_001001913Link to BLAST:NP_001001913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001913.1 320 Q8NH53 320 100% 0 0

Chromosomal Locations for CCDS 31398.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5787854 5788816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGTCATTTCTAAATGGCACCAGCCTAACTCCAGCTTCATTCATCCTAAATGGCATCCCTGGTTTGGAAG
ATGTGCATTTGTGGATCTCCTTCCCACTGTGTACCATGTACAGCATTGCTATTACAGGGAACTTCGGCCT
TATGTACCTCATCTACTGTGATGAGGCCTTACACAGACCTATGTATGTCTTCCTTGCCCTTCTTTCCTTC
ACAGATGTGCTCATGTGCACCAGCACCCTTCCCAACACTCTCTTCATATTGTGGTTTAATCTCAAGGAGA
TTGATTTTAAAGCCTGCCTCGCCCAGATGTTCTTTGTGCACACCTTCACAGGGATGGAGTCTGGGGTGCT
CATGCTCATGGCCCTGGACCACTGTGTGGCCATCTGCTTCCCTCTGCGTTATGCCACCATCCTCACTAAT
TCAGTCATTGCTAAAGCTGGGTTCCTCACTTTTCTTAGGGGTGTGATGCTTGTTATCCCTTCCACTTTCC
TCACCAAGCGCCTTCCATACTGCAAGGGCAACGTCATACCCCACACCTACTGTGACCACATGTCTGTGGC
CAAGATATCTTGTGGTAATGTCAGGGTTAACGCCATCTATGGTTTGATAGTTGCCCTGCTGATTGGGGGC
TTTGATATCCTGTGCATTACAATCTCCTACACTATGATTCTTCAAGCAGTTGTGAGTCTATCATCAGCAG
ATGCTCGACAGAAGGCCTTCAGCACCTGCACTGCCCACTTCTGTGCCATAGTCCTCACCTATGTTCCAGC
CTTCTTTACCTTCTTTACACACCATTTTGGGGGACACACCATTCCTCTACACATACATATTATTATGGCT
AATCTCTACCTACTAATGCCTCCCACAATGAACCCTATTGTGTATGGGGTGAAAACCAGGCAGGTACGAG
AAAGTGTCATTAGGTTCTTTCTTAAGGGAAAGGACAATTCTCATAACTTTTAA

Translation (320 aa):
MSFLNGTSLTPASFILNGIPGLEDVHLWISFPLCTMYSIAITGNFGLMYLIYCDEALHRPMYVFLALLSF
TDVLMCTSTLPNTLFILWFNLKEIDFKACLAQMFFVHTFTGMESGVLMLMALDHCVAICFPLRYATILTN
SVIAKAGFLTFLRGVMLVIPSTFLTKRLPYCKGNVIPHTYCDHMSVAKISCGNVRVNAIYGLIVALLIGG
FDILCITISYTMILQAVVSLSSADARQKAFSTCTAHFCAIVLTYVPAFFTFFTHHFGGHTIPLHIHIIMA
NLYLLMPPTMNPIVYGVKTRQVRESVIRFFLKGKDNSHNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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