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Report for CCDS60542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60542.1 Public Homo sapiens 10 HERC4 24 110 108 CCDS HistoryNCBI Gene:26091Re-query CCDS DB by CCDS ID:60542.1Re-query CCDS DB by GeneID:26091See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000492996.6 ENSP00000422383.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000492996.6Link to Ensembl Protein Viewer:ENSP00000422383.1Re-query CCDS DB by Nucleotide ID:ENST00000492996Re-query CCDS DB by Protein ID:ENSP00000422383
Original member Current member NCBI NM_001278187.2 NP_001265116.1 Accepted alive Link to Nucleotide Sequence:NM_001278187.2Link to Protein Sequence:NP_001265116.1Re-query CCDS DB by Nucleotide ID:NM_001278187Re-query CCDS DB by Protein ID:NP_001265116Link to BLAST:NP_001265116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265116.1 110 Q5GLZ8-4 110 100% 0 0

Chromosomal Locations for CCDS 60542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 68070493 68070599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68072883 68073108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (333 nt):
ATGTTGTGCTGGGGAAATGCATCCTTTGGGCAGCTAGGTTTGGGTGGAATTGATGAAGAAATTGTACTAG
AGCCCAGAAAAAGTGACTTCTTTATAAATAAAAGGGTCCGAGATGTAGGATGTGGACTCAGACATACTGT
GTTTGTTCTGGATGATGGAACAGTGTACACATGTGGATGTAATGATCTAGGACAGCTAGGTCATGAAAAA
TCCAGAAAGAAACCAGAGTTTCGCTCTTGTTTCCCAGGCCGGAGTGCAATGGCGCCATCTCGGCTCACCG
CAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAATAG

Translation (110 aa):
MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEK
SRKKPEFRSCFPGRSAMAPSRLTATSASQVQAILLPQPPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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