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Report for CCDS40060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40060.1 Public Mus musculus 7 Hbb-bt 23 108 98 CCDS HistoryNCBI Gene:101488143Re-query CCDS DB by CCDS ID:40060.1Re-query CCDS DB by GeneID:101488143See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 40060.1
This gene represents the second of two adult-expressed beta-globin genes in the "single" haplotype of the beta-globin cluster (PMID:7237554). The "single" haplotype is found in C57BL/-type strains and includes two highly similar adult beta-globin genes, beta s and beta t, while the "diffuse" haplotype is found in strains such as BALB/c and 129Sv, and includes two somewhat diverse adult beta-globin genes, beta-major and beta-minor. This CCDS is based on primary chromosome 7 of the mouse reference genome assembly, which represents the "single" haplotype.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40060.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098192.3 ENSMUSP00000095794.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098192.3Link to Ensembl Protein Viewer:ENSMUSP00000095794.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098192Re-query CCDS DB by Protein ID:ENSMUSP00000095794
Original member Current member NCBI NM_008220.5 NP_032246.2 Accepted alive Link to Nucleotide Sequence:NM_008220.5Link to Protein Sequence:NP_032246.2Re-query CCDS DB by Nucleotide ID:NM_008220Re-query CCDS DB by Protein ID:NP_032246Link to BLAST:NP_032246.2

Chromosomal Locations for CCDS 40060.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103812656 103812784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103813439 103813661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103813778 103813869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGTGCACCTGACTGATGCTGAGAAGGCTGCTGTCTCTGGCCTGTGGGGAAAGGTGAACGCCGATGAAG
TTGGTGGTGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTTGGACCCAGCGGTACTTTGATAGCTTTGG
AGACCTATCCTCTGCCTCTGCTATCATGGGTAATGCCAAAGTGAAGGCCCATGGCAAGAAAGTGATAACT
GCCTTTAACGATGGCCTGAATCACTTGGACAGCCTCAAGGGCACCTTTGCCAGCCTCAGTGAGCTCCACT
GTGACAAGCTGCATGTGGATCCTGAGAACTTCAGGCTCCTGGGCAATATGATCGTGATTGTGCTGGGCCA
CCACCTGGGCAAGGATTTCACCCCCGCTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCTGCT
GCCCTGGCTCACAAGTACCACTAA

Translation (147 aa):
MVHLTDAEKAAVSGLWGKVNADEVGGEALGRLLVVYPWTQRYFDSFGDLSSASAIMGNAKVKAHGKKVIT
AFNDGLNHLDSLKGTFASLSELHCDKLHVDPENFRLLGNMIVIVLGHHLGKDFTPAAQAAFQKVVAGVAA
ALAHKYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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